niu/bioformats-imageinfo
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update bio-formats version to 6.12.0.

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This commit is contained in:
Yoshihiro OKUMURA 2023-04-20 12:25:50 +09:00
parent b00a67c5d0
commit 705e7f7e7d
Signed by: orrisroot
GPG Key ID: 470AA444C92904B2
3 changed files with 99 additions and 34 deletions
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4
README.md
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@ -13,12 +13,12 @@ mvn package
### run by jar ### run by jar
```shell ```shell
java -jar ./target/dist/lib/bioformats-imageinfo-1.1.2.jar "[path to image file]" java -jar ./target/dist/lib/bioformats-imageinfo-1.1.3.jar "[path to image file]"
``` ```
### run by fat jar ### run by fat jar
```shell ```shell
java -jar ./target/bioformats-imageinfo-1.1.2-jar-with-dependencies.jar "[path to image file]" java -jar ./target/bioformats-imageinfo-1.1.3-jar-with-dependencies.jar "[path to image file]"
``` ```
### library usage ### library usage

94
pom.xml
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@ -3,13 +3,13 @@
<modelVersion>4.0.0</modelVersion> <modelVersion>4.0.0</modelVersion>
<groupId>jp.riken.neurodata.tools.BioFormatsImageInfo</groupId> <groupId>jp.riken.neurodata.tools.BioFormatsImageInfo</groupId>
<artifactId>bioformats-imageinfo</artifactId> <artifactId>bioformats-imageinfo</artifactId>
<version>1.1.2</version> <version>1.1.3</version>
<name>bioformats-imageinfo</name> <name>bioformats-imageinfo</name>
<url>https://neurodata.riken.jp</url> <url>https://neurodata.riken.jp</url>
<properties> <properties>
<bio-formats.version>6.11.1</bio-formats.version> <bio-formats.version>6.12.0</bio-formats.version>
<bioformats-imageinfo.mainClass>jp.riken.neurodata.tools.BioFormatsImageInfo</bioformats-imageinfo.mainClass> <bioformats-imageinfo.mainClass>jp.riken.neurodata.tools.BioFormatsImageInfo</bioformats-imageinfo.mainClass>
<maven.compiler.source>1.8</maven.compiler.source> <maven.compiler.source>1.8</maven.compiler.source>
@ -25,14 +25,39 @@
<artifactId>bio-formats-tools</artifactId> <artifactId>bio-formats-tools</artifactId>
<version>${bio-formats.version}</version> <version>${bio-formats.version}</version>
</dependency> </dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-nop</artifactId>
<version>1.7.30</version>
</dependency>
</dependencies> </dependencies>
<build> <build>
<plugins> <plugins>
<plugin> <plugin>
<groupId>org.apache.maven.plugins</groupId> <groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId> <artifactId>maven-enforcer-plugin</artifactId>
<version>3.3.0</version> <version>3.3.0</version>
<executions>
<execution>
<id>enforce-maven</id>
<goals>
<goal>enforce</goal>
</goals>
<configuration>
<rules>
<requireMavenVersion>
<version>3.2.5</version>
</requireMavenVersion>
</rules>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<version>3.5.0</version>
<executions> <executions>
<execution> <execution>
<id>copy-dependencies</id> <id>copy-dependencies</id>
@ -49,7 +74,7 @@
<plugin> <plugin>
<groupId>org.apache.maven.plugins</groupId> <groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId> <artifactId>maven-jar-plugin</artifactId>
<version>3.2.2</version> <version>3.3.0</version>
<configuration> <configuration>
<archive> <archive>
<manifest> <manifest>
@ -59,34 +84,10 @@
</archive> </archive>
</configuration> </configuration>
</plugin> </plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<version>3.4.1</version>
<configuration>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
<archive>
<manifest>
<mainClass>${bioformats-imageinfo.mainClass}</mainClass>
</manifest>
</archive>
</configuration>
<executions>
<execution>
<id>make-assembly</id>
<phase>package</phase>
<goals>
<goal>single</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin> <plugin>
<groupId>org.codehaus.mojo</groupId> <groupId>org.codehaus.mojo</groupId>
<artifactId>appassembler-maven-plugin</artifactId> <artifactId>appassembler-maven-plugin</artifactId>
<version>1.10</version> <version>2.1.0</version>
<configuration> <configuration>
<assembleDirectory>${project.build.directory}/dist</assembleDirectory> <assembleDirectory>${project.build.directory}/dist</assembleDirectory>
<repositoryLayout>flat</repositoryLayout> <repositoryLayout>flat</repositoryLayout>
@ -107,10 +108,37 @@
</execution> </execution>
</executions> </executions>
</plugin> </plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<version>3.5.0</version>
<configuration>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
<archive>
<manifest>
<mainClass>${bioformats-imageinfo.mainClass}</mainClass>
</manifest>
</archive>
<descriptors>
<descriptor>src/main/assembly/assembly.xml</descriptor>
</descriptors>
</configuration>
<executions>
<execution>
<id>make-assembly</id>
<phase>package</phase>
<goals>
<goal>single</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin> <plugin>
<groupId>org.owasp</groupId> <groupId>org.owasp</groupId>
<artifactId>dependency-check-maven</artifactId> <artifactId>dependency-check-maven</artifactId>
<version>7.4.1</version> <version>8.2.1</version>
<executions> <executions>
<execution> <execution>
<goals> <goals>
@ -126,7 +154,8 @@
<pluginRepository> <pluginRepository>
<id>central</id> <id>central</id>
<name>Central Repository</name> <name>Central Repository</name>
<url>https://repo.maven.apache.org/maven2</url> <!-- <url>https://repo.maven.apache.org/maven2</url> -->
<url>https://repo1.maven.org/maven2/</url>
<layout>default</layout> <layout>default</layout>
</pluginRepository> </pluginRepository>
</pluginRepositories> </pluginRepositories>
@ -135,7 +164,8 @@
<repository> <repository>
<id>central</id> <id>central</id>
<name>Central Repository</name> <name>Central Repository</name>
<url>https://repo.maven.apache.org/maven2</url> <!-- <url>https://repo.maven.apache.org/maven2</url> -->
<url>https://repo1.maven.org/maven2/</url>
</repository> </repository>
<repository> <repository>
<id>ome</id> <id>ome</id>

35
src/main/assembly/assembly.xml Normal file
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@ -0,0 +1,35 @@
<?xml version="1.0" encoding="UTF-8"?>
<assembly xmlns="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.2 http://maven.apache.org/xsd/assembly-1.1.2.xsd">
<id>bin</id>
<formats>
<format>tar.gz</format>
<format>tar.bz2</format>
<format>zip</format>
</formats>
<fileSets>
<fileSet>
<directory>target/dist/bin</directory>
<outputDirectory>bin</outputDirectory>
<excludes>
<exclude>*.bat</exclude>
</excludes>
<directoryMode>0755</directoryMode>
<fileMode>0755</fileMode>
</fileSet>
<fileSet>
<directory>target/dist/bin</directory>
<outputDirectory>bin</outputDirectory>
<includes>
<include>*.bat</include>
</includes>
<directoryMode>0755</directoryMode>
<fileMode>0644</fileMode>
</fileSet>
</fileSets>
<dependencySets>
<dependencySet>
<outputDirectory>lib</outputDirectory>
</dependencySet>
</dependencySets>
</assembly>