update bio-formats version to 6.12.0.
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@ -13,12 +13,12 @@ mvn package
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### run by jar
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```shell
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java -jar ./target/dist/lib/bioformats-imageinfo-1.1.2.jar "[path to image file]"
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java -jar ./target/dist/lib/bioformats-imageinfo-1.1.3.jar "[path to image file]"
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```
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### run by fat jar
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```shell
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java -jar ./target/bioformats-imageinfo-1.1.2-jar-with-dependencies.jar "[path to image file]"
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java -jar ./target/bioformats-imageinfo-1.1.3-jar-with-dependencies.jar "[path to image file]"
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```
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### library usage
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94
pom.xml
94
pom.xml
@ -3,13 +3,13 @@
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<modelVersion>4.0.0</modelVersion>
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<groupId>jp.riken.neurodata.tools.BioFormatsImageInfo</groupId>
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<artifactId>bioformats-imageinfo</artifactId>
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<version>1.1.2</version>
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<version>1.1.3</version>
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<name>bioformats-imageinfo</name>
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<url>https://neurodata.riken.jp</url>
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<properties>
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<bio-formats.version>6.11.1</bio-formats.version>
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<bio-formats.version>6.12.0</bio-formats.version>
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<bioformats-imageinfo.mainClass>jp.riken.neurodata.tools.BioFormatsImageInfo</bioformats-imageinfo.mainClass>
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<maven.compiler.source>1.8</maven.compiler.source>
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@ -25,14 +25,39 @@
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<artifactId>bio-formats-tools</artifactId>
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<version>${bio-formats.version}</version>
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</dependency>
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<dependency>
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<groupId>org.slf4j</groupId>
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<artifactId>slf4j-nop</artifactId>
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<version>1.7.30</version>
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</dependency>
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</dependencies>
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<build>
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<plugins>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-dependency-plugin</artifactId>
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<artifactId>maven-enforcer-plugin</artifactId>
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<version>3.3.0</version>
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<executions>
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<execution>
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<id>enforce-maven</id>
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<goals>
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<goal>enforce</goal>
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</goals>
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<configuration>
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<rules>
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<requireMavenVersion>
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<version>3.2.5</version>
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</requireMavenVersion>
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</rules>
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</configuration>
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</execution>
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</executions>
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</plugin>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-dependency-plugin</artifactId>
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<version>3.5.0</version>
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<executions>
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<execution>
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<id>copy-dependencies</id>
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@ -49,7 +74,7 @@
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-jar-plugin</artifactId>
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<version>3.2.2</version>
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<version>3.3.0</version>
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<configuration>
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<archive>
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<manifest>
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@ -59,34 +84,10 @@
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</archive>
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</configuration>
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</plugin>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-assembly-plugin</artifactId>
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<version>3.4.1</version>
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<configuration>
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<descriptorRefs>
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<descriptorRef>jar-with-dependencies</descriptorRef>
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</descriptorRefs>
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<archive>
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<manifest>
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<mainClass>${bioformats-imageinfo.mainClass}</mainClass>
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</manifest>
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</archive>
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</configuration>
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<executions>
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<execution>
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<id>make-assembly</id>
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<phase>package</phase>
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<goals>
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<goal>single</goal>
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</goals>
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</execution>
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</executions>
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</plugin>
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<plugin>
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<groupId>org.codehaus.mojo</groupId>
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<artifactId>appassembler-maven-plugin</artifactId>
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<version>1.10</version>
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<version>2.1.0</version>
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<configuration>
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<assembleDirectory>${project.build.directory}/dist</assembleDirectory>
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<repositoryLayout>flat</repositoryLayout>
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@ -107,10 +108,37 @@
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</execution>
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</executions>
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</plugin>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-assembly-plugin</artifactId>
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<version>3.5.0</version>
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<configuration>
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<descriptorRefs>
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<descriptorRef>jar-with-dependencies</descriptorRef>
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</descriptorRefs>
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<archive>
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<manifest>
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<mainClass>${bioformats-imageinfo.mainClass}</mainClass>
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</manifest>
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</archive>
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<descriptors>
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<descriptor>src/main/assembly/assembly.xml</descriptor>
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</descriptors>
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</configuration>
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<executions>
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<execution>
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<id>make-assembly</id>
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<phase>package</phase>
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<goals>
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<goal>single</goal>
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</goals>
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</execution>
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</executions>
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</plugin>
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<plugin>
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<groupId>org.owasp</groupId>
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<artifactId>dependency-check-maven</artifactId>
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<version>7.4.1</version>
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<version>8.2.1</version>
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<executions>
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<execution>
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<goals>
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@ -126,7 +154,8 @@
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<pluginRepository>
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<id>central</id>
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<name>Central Repository</name>
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<url>https://repo.maven.apache.org/maven2</url>
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<!-- <url>https://repo.maven.apache.org/maven2</url> -->
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<url>https://repo1.maven.org/maven2/</url>
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<layout>default</layout>
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</pluginRepository>
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</pluginRepositories>
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@ -135,7 +164,8 @@
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<repository>
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<id>central</id>
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<name>Central Repository</name>
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<url>https://repo.maven.apache.org/maven2</url>
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<!-- <url>https://repo.maven.apache.org/maven2</url> -->
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<url>https://repo1.maven.org/maven2/</url>
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</repository>
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<repository>
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<id>ome</id>
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35
src/main/assembly/assembly.xml
Normal file
35
src/main/assembly/assembly.xml
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@ -0,0 +1,35 @@
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<?xml version="1.0" encoding="UTF-8"?>
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<assembly xmlns="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xsi:schemaLocation="http://maven.apache.org/plugins/maven-assembly-plugin/assembly/1.1.2 http://maven.apache.org/xsd/assembly-1.1.2.xsd">
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<id>bin</id>
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<formats>
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<format>tar.gz</format>
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<format>tar.bz2</format>
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<format>zip</format>
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</formats>
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<fileSets>
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<fileSet>
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<directory>target/dist/bin</directory>
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<outputDirectory>bin</outputDirectory>
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<excludes>
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<exclude>*.bat</exclude>
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</excludes>
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<directoryMode>0755</directoryMode>
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<fileMode>0755</fileMode>
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</fileSet>
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<fileSet>
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<directory>target/dist/bin</directory>
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<outputDirectory>bin</outputDirectory>
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<includes>
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<include>*.bat</include>
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</includes>
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<directoryMode>0755</directoryMode>
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<fileMode>0644</fileMode>
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</fileSet>
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</fileSets>
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<dependencySets>
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<dependencySet>
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<outputDirectory>lib</outputDirectory>
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</dependencySet>
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</dependencySets>
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</assembly>
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