implemented -s --skip-if-file-exists option for upload commnad.
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@ -26,6 +26,12 @@ class UploadCommand(BaseCommand):
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upload_parser.add_argument(
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upload_parser.add_argument(
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"-r", "--recursive", help="upload directories and their contents recursive", action="store_true"
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"-r", "--recursive", help="upload directories and their contents recursive", action="store_true"
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)
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)
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upload_parser.add_argument(
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"-s",
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"--skip-if-exists",
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help="skip the upload if file is already uploaded and file size is the same",
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action="store_true",
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)
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upload_parser.add_argument("local_path", help="local file path (/foo/bar/data.txt)")
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upload_parser.add_argument("local_path", help="local file path (/foo/bar/data.txt)")
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upload_parser.add_argument("remote_path", help="remote folder path (remote:/lab/path/)")
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upload_parser.add_argument("remote_path", help="remote folder path (remote:/lab/path/)")
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upload_parser.set_defaults(func=cls.func)
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upload_parser.set_defaults(func=cls.func)
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@ -35,10 +41,11 @@ class UploadCommand(BaseCommand):
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local_path = str(args.local_path)
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local_path = str(args.local_path)
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remote_path = str(args.remote_path)
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remote_path = str(args.remote_path)
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is_recursive = bool(args.recursive)
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is_recursive = bool(args.recursive)
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cls.upload(local_path, remote_path, is_recursive)
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is_skip_if_exists = bool(args.skip_if_exists)
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cls.upload(local_path, remote_path, is_recursive, is_skip_if_exists)
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@classmethod
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@classmethod
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def upload(cls, local_path: str, remote_path: str, is_recursive: bool) -> None:
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def upload(cls, local_path: str, remote_path: str, is_recursive: bool, is_skip_if_exists: bool) -> None:
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(remote, laboratory_name, r_path) = cls._parse_remote_host_with_path(remote_path)
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(remote, laboratory_name, r_path) = cls._parse_remote_host_with_path(remote_path)
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l_path = os.path.abspath(local_path)
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l_path = os.path.abspath(local_path)
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if not os.path.exists(l_path):
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if not os.path.exists(l_path):
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@ -78,22 +85,24 @@ class UploadCommand(BaseCommand):
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infos.append(UploadFileInfo(folder_map[d_dirname], os.path.join(dirpath, filename)))
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infos.append(UploadFileInfo(folder_map[d_dirname], os.path.join(dirpath, filename)))
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else:
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else:
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infos.append(UploadFileInfo(folder, l_path))
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infos.append(UploadFileInfo(folder, l_path))
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cls.__multiple_upload(connection, infos)
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cls.__multiple_upload(connection, infos, is_skip_if_exists)
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@classmethod
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@classmethod
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def __multiple_upload(cls, connection: MDRSConnection, infos: list[UploadFileInfo]) -> None:
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def __multiple_upload(
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cls, connection: MDRSConnection, infos: list[UploadFileInfo], is_skip_if_exists: bool
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) -> None:
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file_api = FilesApi(connection)
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file_api = FilesApi(connection)
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with ThreadPoolExecutor(max_workers=CONCURRENT) as pool:
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with ThreadPoolExecutor(max_workers=CONCURRENT) as pool:
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pool.map(lambda x: cls.__multiple_upload_worker(file_api, x), infos)
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pool.map(lambda x: cls.__multiple_upload_worker(file_api, x, is_skip_if_exists), infos)
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@classmethod
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@classmethod
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def __multiple_upload_worker(cls, file_api: FilesApi, info: UploadFileInfo) -> None:
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def __multiple_upload_worker(cls, file_api: FilesApi, info: UploadFileInfo, is_skip_if_exists: bool) -> None:
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basename = os.path.basename(info.path)
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basename = os.path.basename(info.path)
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file = info.folder.find_file(basename)
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file = info.folder.find_file(basename)
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try:
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try:
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if file is None:
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if file is None:
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file_api.create(info.folder.id, info.path)
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file_api.create(info.folder.id, info.path)
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else:
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elif not is_skip_if_exists or file.size != os.path.getsize(info.path):
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file_api.update(file, info.path)
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file_api.update(file, info.path)
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print(os.path.join(info.folder.path, basename))
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print(os.path.join(info.folder.path, basename))
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except MDRSException as e:
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except MDRSException as e:
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