orrisroot
5bdf837941
Support accessing repositories using DOI strings with optional subpaths
across ls, download, metadata, and file-metadata commands.
- Implement GET v3/doi/{id}/ API model and client calls
- Parse and resolve DOI paths into respective folder and files
- Extract common folder and file resolution logic to shared helpers
- Update README with example DOI-based shell commands
49 lines
2.0 KiB
Python
49 lines
2.0 KiB
Python
import os
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from argparse import Namespace
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from typing import Any
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from mdrsclient.api import FilesApi, FoldersApi
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from mdrsclient.commands.base import BaseCommand
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from mdrsclient.exceptions import IllegalArgumentException
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from mdrsclient.models.file import find_file
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class RmCommand(BaseCommand):
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@classmethod
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def register(cls, parsers: Any) -> None:
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rm_parser = parsers.add_parser("rm", help="remove the file or folder")
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rm_parser.add_argument(
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"-r", "--recursive", help="remove folders and their contents recursive", action="store_true"
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)
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rm_parser.add_argument("remote_path", help="remote file path (remote:/lab/path/file)")
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rm_parser.set_defaults(func=cls.func)
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@classmethod
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def func(cls, args: Namespace) -> None:
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remote_path = str(args.remote_path)
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is_recursive = bool(args.recursive)
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cls.rm(remote_path, is_recursive)
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@classmethod
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def rm(cls, remote_path: str, is_recursive: bool) -> None:
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remote, laboratory_name, r_path = cls._parse_remote_host_with_path(remote_path)
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r_path = r_path.rstrip("/")
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r_dirname = os.path.dirname(r_path)
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r_basename = os.path.basename(r_path)
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connection = cls._create_connection(remote)
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laboratory = cls._find_laboratory(connection, laboratory_name)
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parent_folder = cls._find_folder(connection, laboratory, r_dirname)
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parent_files = cls._find_files(connection, parent_folder.id)
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file = find_file(parent_files, r_basename)
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if file is not None:
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file_api = FilesApi(connection)
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file_api.destroy(file)
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else:
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folder = parent_folder.find_sub_folder(r_basename)
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if folder is None:
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raise IllegalArgumentException(f"Cannot remove `{r_path}`: No such file or folder.")
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if not is_recursive:
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raise IllegalArgumentException(f"Cannot remove `{r_path}`: Is a folder.")
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folder_api = FoldersApi(connection)
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folder_api.destroy(folder.id, True)
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