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Yoshihiro OKUMURA 2022-06-15 11:22:57 +09:00
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# Logs
logs
*.log
npm-debug.log*
yarn-debug.log*
yarn-error.log*
lerna-debug.log*
.pnpm-debug.log*
# Diagnostic reports (https://nodejs.org/api/report.html)
report.[0-9]*.[0-9]*.[0-9]*.[0-9]*.json
# Runtime data
pids
*.pid
*.seed
*.pid.lock
# Directory for instrumented libs generated by jscoverage/JSCover
lib-cov
# Coverage directory used by tools like istanbul
coverage
*.lcov
# nyc test coverage
.nyc_output
# Grunt intermediate storage (https://gruntjs.com/creating-plugins#storing-task-files)
.grunt
# Bower dependency directory (https://bower.io/)
bower_components
# node-waf configuration
.lock-wscript
# Compiled binary addons (https://nodejs.org/api/addons.html)
build/Release
# Dependency directories
node_modules/
jspm_packages/
# Snowpack dependency directory (https://snowpack.dev/)
web_modules/
# TypeScript cache
*.tsbuildinfo
# Optional npm cache directory
.npm
# Optional eslint cache
.eslintcache
# Optional stylelint cache
.stylelintcache
# Microbundle cache
.rpt2_cache/
.rts2_cache_cjs/
.rts2_cache_es/
.rts2_cache_umd/
# Optional REPL history
.node_repl_history
# Output of 'npm pack'
*.tgz
# Yarn Integrity file
.yarn-integrity
# dotenv environment variable files
.env
.env.development.local
.env.test.local
.env.production.local
.env.local
# parcel-bundler cache (https://parceljs.org/)
.cache
.parcel-cache
# Next.js build output
.next
out
# Nuxt.js build / generate output
.nuxt
dist
# Gatsby files
.cache/
# Comment in the public line in if your project uses Gatsby and not Next.js
# https://nextjs.org/blog/next-9-1#public-directory-support
# public
# vuepress build output
.vuepress/dist
# vuepress v2.x temp and cache directory
.temp
.cache
# Docusaurus cache and generated files
.docusaurus
# Serverless directories
.serverless/
# FuseBox cache
.fusebox/
# DynamoDB Local files
.dynamodb/
# TernJS port file
.tern-port
# Stores VSCode versions used for testing VSCode extensions
.vscode-test
# yarn v2
.yarn/cache
.yarn/unplugged
.yarn/build-state.yml
.yarn/install-state.gz
.pnp.*

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# Typescript library for 3D MRI Data Viewer System
This library is a port of a part of the "3D MRI Data Viewer System on Neuroimaging platform" in typescript.
## Reference
* Matsuda K, Higo N, Oishi T, Niki K, Suzuki R, Masaki S, Fujimaki N, Ichikawa K and Usui S (2010). 3D MRI Data Viewer System on Neuroimaging-platform. Front. Neurosci. Conference Abstract: Neuroinformatics 2010 . doi: 10.3389/conf.fnins.2010.13.00042
Typescript

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{
"name": "mridatalib",
"version": "1.0.0",
"main": "index.js",
"license": "MIT",
"scripts": {
"build": "tsc -p .",
"lint": "eslint 'src/**/*.ts'",
"lint:fix": "eslint --fix 'src/**/*.ts'"
},
"eslintConfig": {
"extends": [
"eslint:recommended",
"plugin:@typescript-eslint/eslint-recommended",
"plugin:@typescript-eslint/recommended",
"plugin:prettier/recommended",
"prettier"
],
"plugins": [
"@typescript-eslint"
],
"env": {
"browser": true,
"es6": true
},
"parser": "@typescript-eslint/parser",
"parserOptions": {
"sourceType": "module",
"project": "./tsconfig.json"
},
"rules": {
}
},
"prettier": {
"semi": true,
"singleQuote": true,
"printWidth": 1000,
"tabWidth": 4
},
"dependencies": {},
"devDependencies": {
"@typescript-eslint/eslint-plugin": "^5.28.0",
"@typescript-eslint/parser": "^5.28.0",
"eslint": "^8.17.0",
"eslint-config-prettier": "^8.5.0",
"eslint-plugin-prettier": "^4.0.0",
"prettier": "^2.7.0",
"typescript": "^4.7.3"
}
}

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export interface M3DHeader {
magic: number;
x: number;
y: number;
z: number;
filename: string;
subject: string;
direction: string;
date: number;
fov: number;
weight: number;
ax: number;
ay: number;
az: number;
ox: number;
oy: number;
oz: number;
dlen: number;
dth: number;
memo: string;
}
interface M3DImageRenderingContext {
a1: number;
a2: number;
a3: number;
b1: number;
b2: number;
b3: number;
c1: number;
c2: number;
c3: number;
d1: number;
d2: number;
d3: number;
ra1: number;
ra1_2: number;
ra2: number;
ra2_2: number;
ra3: number;
ra3_2: number;
rb1: number;
rb1_2: number;
rb2: number;
rb2_2: number;
rb3: number;
rb3_2: number;
rc1: number;
rc1_2: number;
rc2: number;
rc2_2: number;
rc3: number;
rc3_2: number;
rd1: number;
rd2: number;
rd3: number;
}
/* MeshLength unit is same as fov unit */
const MeshLength = 10;
enum DrawingLineType {
VLine = 0,
VDottedLine = 1,
HLine = 2,
HDottedLine = 3,
}
const LineBrightness = 200;
const DottedLineBrightness = 128;
const EXACTSWITCH: 0 | 1 = 1;
const MaxIntensity = 200;
class M3D {
private data: ArrayBuffer;
private header: M3DHeader | null = null;
private xposView: Int32Array | null = null;
private zposView: Int32Array | null = null;
private yposView: Int32Array | null = null;
private img3dView: Uint8ClampedArray | null = null;
private imageSize = 0; // imagesize size : max (size_x, size_y, size_z)
private centerX = 0; // camera coordinates origin : x
private centerY = 0; // camera coordinates origin : y
private centerZ = 0; // camera coordinates origin : z
private ox = 0; // object coordinates origin : x
private oy = 0; // object coordinates origin : y
private oz = 0; // object coordinates origin : z
constructor(data: ArrayBuffer) {
this.data = data;
this._initialize();
}
isBigEndian(): boolean {
return new Uint8Array(new Uint32Array([0x11223344]).buffer)[0] === 0x11;
}
getHeader(): M3DHeader | null {
return this.header;
}
drawImage(canvas: HTMLCanvasElement, ax: number, ay: number, az: number, cutdepth: number, th: number, is3d: boolean, mesh: boolean): boolean {
const irc: M3DImageRenderingContext = {
a1: 0,
a2: 0,
a3: 0,
b1: 0,
b2: 0,
b3: 0,
c1: 0,
c2: 0,
c3: 0,
d1: 0,
d2: 0,
d3: 0,
ra1: 0,
ra1_2: 0,
ra2: 0,
ra2_2: 0,
ra3: 0,
ra3_2: 0,
rb1: 0,
rb1_2: 0,
rb2: 0,
rb2_2: 0,
rb3: 0,
rb3_2: 0,
rc1: 0,
rc1_2: 0,
rc2: 0,
rc2_2: 0,
rc3: 0,
rc3_2: 0,
rd1: 0,
rd2: 0,
rd3: 0,
};
// console.log(ax, ay, az, cutdepth, th, dim, mesh)
if (this.header === null) {
return false;
}
canvas.width = this.imageSize;
canvas.height = this.imageSize;
const ctx = canvas.getContext('2d');
if (ctx === null) {
return false;
}
ctx.fillStyle = 'rgb(0, 0, 0)';
ctx.fillRect(0, 0, this.imageSize, this.imageSize);
const img = ctx.getImageData(0, 0, this.imageSize, this.imageSize);
this._setMatrix(ax, ay, az, irc);
if (is3d) {
const ddimg = [...Array<number>(this.imageSize * this.imageSize)].map(() => 0);
this._makeDIMG(img, cutdepth, th, ddimg, irc);
this._makeShadingImage(img, ddimg);
} else {
this._makeSliceImage(img, cutdepth, irc);
}
if (mesh) {
this._drawMesh(img, irc);
}
ctx.putImageData(img, 0, 0);
return true;
}
private _makeDIMG(img: ImageData, cutdepth: number, th: number, ddimg: number[], irc: M3DImageRenderingContext) {
if (this.header === null) {
return;
}
const pdimg = [...Array<number>(this.imageSize * this.imageSize)].map(() => 0);
const sw = th > this.header.dth ? 1 : th < this.header.dth ? 2 : EXACTSWITCH;
switch (sw) {
case 0: {
this._transSurface(cutdepth, pdimg, irc);
let pos = 0;
for (let j = 0; j < this.imageSize; j++) {
for (let i = 0; i < this.imageSize; i++, pos++) {
ddimg[pos] = pdimg[pos];
const pix = this._getPixel(i, j, cutdepth, irc);
if (pix > th) {
this._drawPixel(img, pos, pix, pix, pix);
ddimg[pos] = cutdepth;
continue;
}
}
}
break;
}
case 1: {
this._transSurface(cutdepth, pdimg, irc);
let pos = 0;
for (let y = 0; y < this.imageSize; y++) {
for (let x = 0; x < this.imageSize; x++, pos++) {
let pdPos = (ddimg[pos] = pdimg[pos]);
if (pdPos === 0) {
continue;
}
const pix = this._getPixel(x, y, cutdepth, irc);
if (pix > th) {
this._drawPixel(img, pos, pix, pix, pix);
ddimg[pos] = cutdepth;
continue;
}
if (pdPos < cutdepth) {
pdPos = cutdepth;
}
ddimg[pos] = 0;
for (let z = pdPos; z < this.imageSize; z++) {
const pix = this._getPixel(x, y, z, irc);
if (pix > th) {
ddimg[pos] = z;
break;
}
}
}
}
break;
}
case 2: {
let pos = 0;
for (let y = 0; y < this.imageSize; y++) {
for (let x = 0; x < this.imageSize; x++, pos++) {
ddimg[pos] = 0;
for (let z = cutdepth; z < this.imageSize; z++) {
const pix = this._getPixel(x, y, z, irc);
if (pix > th) {
if (z === cutdepth) {
this._drawPixel(img, pos, pix, pix, pix);
} else {
ddimg[pos] = z;
}
break;
}
}
}
}
break;
}
}
}
private _makeShadingImage(img: ImageData, ddimg: number[]) {
let pos = 0;
for (let x = 0; x < this.imageSize; x++) {
for (let y = 0; y < this.imageSize; y++, pos++) {
const base = pos * 4;
if (img.data[base] === 0) {
let timg2d = 0;
if (x < this.imageSize - 2 && y < this.imageSize - 2) {
if (ddimg[pos] !== 0) {
const nx = (ddimg[pos] + ddimg[pos + this.imageSize] - ddimg[pos + 2] - ddimg[pos + 2 + this.imageSize]) / 4.0;
const ny = (ddimg[pos] + ddimg[pos + 1] - ddimg[pos + this.imageSize * 2] - ddimg[pos + 1 + this.imageSize * 2]) / 4.0;
const n = Math.sqrt(nx * nx + ny * ny + 1);
timg2d = Math.round(MaxIntensity / n);
}
}
this._drawPixel(img, pos, timg2d, timg2d, timg2d);
}
}
}
}
private _makeSliceImage(img: ImageData, cutdepth: number, irc: M3DImageRenderingContext) {
let pos = 0;
for (let y = 0; y < this.imageSize; y++) {
for (let x = 0; x < this.imageSize; x++, pos++) {
const pix = this._getPixel(x, y, cutdepth, irc);
this._drawPixel(img, pos, pix, pix, pix);
}
}
}
private _drawMesh(img: ImageData, irc: M3DImageRenderingContext) {
let origx: number;
let origy: number;
if (this.header === null) {
return;
}
if (this.header.ox !== 0 && this.header.oy !== 0) {
origx = this.header.ox * irc.ra1 + this.header.oy * irc.rb1 + this.header.oz * irc.rc1 + irc.rd1;
origy = this.header.ox * irc.ra2 + this.header.oy * irc.rb2 + this.header.oz * irc.rc2 + irc.rd2;
} else {
origx = this.centerX;
origy = this.centerY;
}
origx = this._fround(origx, 5);
origy = this._fround(origy, 5);
const band = (this.header.x * MeshLength) / this.header.fov;
const r = 0;
const g = 0;
const b = LineBrightness;
const sr = 0;
const sg = 0;
const sb = DottedLineBrightness;
this._drawLine(img, Math.round(origx), r, g, b, DrawingLineType.VLine);
this._drawLine(img, Math.round(origy), r, g, b, DrawingLineType.HLine);
for (let pos = Math.round(origx) + band; pos < this.imageSize; pos += band) {
this._drawLine(img, Math.round(pos), sr, sg, sb, DrawingLineType.VDottedLine);
}
for (let pos = Math.round(origx) - band; pos >= 0; pos -= band) {
this._drawLine(img, Math.round(pos), sr, sg, sb, DrawingLineType.VDottedLine);
}
for (let pos = Math.round(origy) + band; pos < this.imageSize; pos += band) {
this._drawLine(img, Math.round(pos), sr, sg, sb, DrawingLineType.HDottedLine);
}
for (let pos = Math.round(origy) - band; pos >= 0; pos -= band) {
this._drawLine(img, Math.round(pos), sr, sg, sb, DrawingLineType.HDottedLine);
}
}
private _drawLine(img: ImageData, value: number, r: number, g: number, b: number, type: DrawingLineType) {
switch (type) {
case DrawingLineType.VLine: {
let pos = value;
for (let y = 0; y < this.imageSize; y++, pos += this.imageSize) {
this._drawPixel(img, pos, r, g, b);
}
break;
}
case DrawingLineType.VDottedLine: {
let pos = value;
for (let y = 0; y < this.imageSize; y += 2, pos += this.imageSize * 2) {
this._drawPixel(img, pos, r, g, b);
}
break;
}
case DrawingLineType.HLine: {
let pos = value * this.imageSize;
for (let x = 0; x < this.imageSize; x++, pos++) {
this._drawPixel(img, pos, r, g, b);
}
break;
}
case DrawingLineType.HDottedLine: {
let pos = value * this.imageSize;
for (let x = 0; x < this.imageSize; x += 2, pos += 2) {
this._drawPixel(img, pos, r, g, b);
}
break;
}
default:
break;
}
}
private _drawPixel(img: ImageData, pos: number, r: number, g: number, b: number) {
let base = pos * 4;
img.data[base++] = r;
img.data[base++] = g;
img.data[base++] = b;
img.data[base] = 255;
}
private _getPixel(x: number, y: number, z: number, irc: M3DImageRenderingContext): number {
const len = [...Array<number>(8)].map(() => 0);
const ratio = [...Array<number>(8)].map(() => 0);
const tx = x * irc.a1 + y * irc.b1 + z * irc.c1 + irc.d1;
const ty = x * irc.a2 + y * irc.b2 + z * irc.c2 + irc.d2;
const tz = x * irc.a3 + y * irc.b3 + z * irc.c3 + irc.d3;
let ix = Math.floor(tx);
let iy = Math.floor(ty);
let iz = Math.floor(tz);
if (this.header === null || this.img3dView === null) {
return 0;
}
if (ix < 0 || ix + 1 >= this.header.x || iy < 0 || iy + 1 >= this.header.y || iz < 0 || iz + 1 >= this.header.z) {
return 0;
}
const ax1 = Math.abs(tx - ix);
const ax2 = Math.abs(1 - ax1);
const ay1 = Math.abs(ty - iy);
const ay2 = Math.abs(1 - ay1);
const az1 = Math.abs(tz - iz);
const az2 = Math.abs(1 - az1);
let sumlen1 = 0;
for (let i = 0; i < 8; i++) {
len[i] = i & 1 ? ax2 : ax1;
len[i] += i & 2 ? ay2 : ay1;
len[i] += i & 4 ? az2 : az1;
if (len[i] < 0.001) {
ix += i & 1 ? 1 : 0;
iy += i & 2 ? 1 : 0;
iz += i & 4 ? 1 : 0;
return this.img3dView[ix + iy * this.header.x + iz * this.header.x * this.header.y];
}
sumlen1 += ratio[i] = 1 / len[i];
}
let pos = ix + iy * this.header.x + iz * this.header.x * this.header.y;
let sumlen2 = this.img3dView[pos] * ratio[0];
sumlen2 += this.img3dView[pos + 1] * ratio[1];
sumlen2 += this.img3dView[pos + this.header.x] * ratio[2];
sumlen2 += this.img3dView[pos + 1 + this.header.x] * ratio[3];
pos += this.header.x * this.header.y;
sumlen2 += this.img3dView[pos] * ratio[4];
sumlen2 += this.img3dView[pos + 1] * ratio[5];
sumlen2 += this.img3dView[pos + this.header.x] * ratio[6];
sumlen2 += this.img3dView[pos + 1 + this.header.x] * ratio[7];
return Math.round(sumlen2 / sumlen1);
}
private _transSurface(cutdepth: number, pdimg: number[], irc: M3DImageRenderingContext) {
if (this.header === null || this.xposView === null || this.yposView === null || this.zposView === null) {
return;
}
const ix = [...Array<number>(8)].map(() => 0);
const iy = [...Array<number>(8)].map(() => 0);
const iz = [...Array<number>(8)].map(() => 0);
for (let i = 0; i < this.header.dlen; i++) {
const x = this.xposView[i];
const y = this.yposView[i];
const z = this.zposView[i];
ix[0] = x * irc.ra1 + y * irc.rb1 + z * irc.rc1 + irc.rd1;
iy[0] = x * irc.ra2 + y * irc.rb2 + z * irc.rc2 + irc.rd2;
iz[0] = x * irc.ra3 + y * irc.rb3 + z * irc.rc3 + irc.rd3;
ix[1] = ix[0] + irc.ra1_2;
iy[1] = iy[0] + irc.ra2_2;
iz[1] = iz[0] + irc.ra3_2;
ix[2] = ix[0] + irc.rb1_2;
iy[2] = iy[0] + irc.rb2_2;
iz[2] = iz[0] + irc.rb3_2;
ix[3] = ix[0] + irc.rc1_2;
iy[3] = iy[0] + irc.rc2_2;
iz[3] = iz[0] + irc.rc3_2;
ix[4] = ix[1] + irc.rb1_2;
iy[4] = iy[1] + irc.rb2_2;
iz[4] = iz[1] + irc.rb3_2;
ix[5] = ix[1] + irc.rc1_2;
iy[5] = iy[1] + irc.rc2_2;
iz[5] = iz[1] + irc.rc3_2;
ix[6] = ix[2] + irc.rc1_2;
iy[6] = iy[2] + irc.rc2_2;
iz[6] = iz[2] + irc.rc3_2;
ix[7] = ix[4] + irc.rc1_2;
iy[7] = iy[4] + irc.rc2_2;
iz[7] = iz[4] + irc.rc3_2;
for (let j = 0; j < 8; j++) {
const xi = Math.round(ix[j]);
const yi = Math.round(iy[j]);
if (xi < 0 || xi >= this.imageSize || yi < 0 || yi >= this.imageSize || iz[j] < cutdepth || iz[j] >= this.imageSize) {
continue;
}
const pos = xi + yi * this.imageSize;
if (pdimg[pos] === 0 || pdimg[pos] > iz[j]) {
pdimg[pos] = iz[j];
}
}
}
}
private _setMatrix(x: number, y: number, z: number, irc: M3DImageRenderingContext) {
const xtr = [...Array<number>(9)].map(() => 0);
const ytr = [...Array<number>(9)].map(() => 0);
const ztr = [...Array<number>(9)].map(() => 0);
const tmp = [...Array<number>(9)].map(() => 0);
const tr = [...Array<number>(9)].map(() => 0);
this._setXtr(xtr, (x * Math.PI) / 180.0);
this._setYtr(ytr, (y * Math.PI) / 180.0);
this._setZtr(ztr, (z * Math.PI) / 180.0);
this._multi(ytr, xtr, tmp);
this._multi(ztr, tmp, tr);
irc.a1 = tr[0];
irc.b1 = tr[1];
irc.c1 = tr[2];
irc.a2 = tr[3];
irc.b2 = tr[4];
irc.c2 = tr[5];
irc.a3 = tr[6];
irc.b3 = tr[7];
irc.c3 = tr[8];
irc.d1 = -irc.a1 * this.centerX - irc.b1 * this.centerY - irc.c1 * this.centerZ + this.ox;
irc.d2 = -irc.a2 * this.centerX - irc.b2 * this.centerY - irc.c2 * this.centerZ + this.oy;
irc.d3 = -irc.a3 * this.centerX - irc.b3 * this.centerY - irc.c3 * this.centerZ + this.oz;
this._setXtr(xtr, (-x * Math.PI) / 180.0);
this._setYtr(ytr, (-y * Math.PI) / 180.0);
this._setZtr(ztr, (-z * Math.PI) / 180.0);
this._multi(ytr, ztr, tmp);
this._multi(xtr, tmp, tr);
irc.ra1 = tr[0];
irc.rb1 = tr[1];
irc.rc1 = tr[2];
irc.ra2 = tr[3];
irc.rb2 = tr[4];
irc.rc2 = tr[5];
irc.ra3 = tr[6];
irc.rb3 = tr[7];
irc.rc3 = tr[8];
irc.rd1 = -irc.ra1 * this.ox - irc.rb1 * this.oy - irc.rc1 * this.oz + this.centerX;
irc.rd2 = -irc.ra2 * this.ox - irc.rb2 * this.oy - irc.rc2 * this.oz + this.centerY;
irc.rd3 = -irc.ra3 * this.ox - irc.rb3 * this.oy - irc.rc3 * this.oz + this.centerZ;
irc.ra1_2 = irc.ra1 / 2;
irc.rb1_2 = irc.rb1 / 2;
irc.rc1_2 = irc.rc1 / 2;
irc.ra2_2 = irc.ra2 / 2;
irc.rb2_2 = irc.rb2 / 2;
irc.rc2_2 = irc.rc2 / 2;
irc.ra3_2 = irc.ra3 / 2;
irc.rb3_2 = irc.rb3 / 2;
irc.rc3_2 = irc.rc3 / 2;
}
private _setXtr(xtr: number[], ang: number) {
xtr[0] = 1;
xtr[1] = 0;
xtr[2] = 0;
xtr[3] = 0;
xtr[4] = Math.cos(ang);
xtr[5] = -Math.sin(ang);
xtr[6] = 0;
xtr[7] = Math.sin(ang);
xtr[8] = Math.cos(ang);
}
private _setYtr(ytr: number[], ang: number) {
ytr[0] = Math.cos(ang);
ytr[1] = 0;
ytr[2] = Math.sin(ang);
ytr[3] = 0;
ytr[4] = 1;
ytr[5] = 0;
ytr[6] = -Math.sin(ang);
ytr[7] = 0;
ytr[8] = Math.cos(ang);
}
private _setZtr(ztr: number[], ang: number) {
ztr[0] = Math.cos(ang);
ztr[1] = -Math.sin(ang);
ztr[2] = 0;
ztr[3] = Math.sin(ang);
ztr[4] = Math.cos(ang);
ztr[5] = 0;
ztr[6] = 0;
ztr[7] = 0;
ztr[8] = 1;
}
private _multi(l: number[], r: number[], a: number[]) {
a[0] = l[0] * r[0] + l[1] * r[3] + l[2] * r[6];
a[3] = l[3] * r[0] + l[4] * r[3] + l[5] * r[6];
a[6] = l[6] * r[0] + l[7] * r[3] + l[8] * r[6];
a[1] = l[0] * r[1] + l[1] * r[4] + l[2] * r[7];
a[4] = l[3] * r[1] + l[4] * r[4] + l[5] * r[7];
a[7] = l[6] * r[1] + l[7] * r[4] + l[8] * r[7];
a[2] = l[0] * r[2] + l[1] * r[5] + l[2] * r[8];
a[5] = l[3] * r[2] + l[4] * r[5] + l[5] * r[8];
a[8] = l[6] * r[2] + l[7] * r[5] + l[8] * r[8];
}
private _fround(x: number, n: number) {
return Math.round(x * Math.pow(10, n)) / Math.pow(10, n);
}
private _initialize(): void {
const view = new DataView(this.data);
const magic = view.getInt32(0, true);
const isLittleEndianFile = magic === 0x4d523344;
if (!isLittleEndianFile && magic !== 0x4433524d) {
console.log('invalid data format, this data is not m3d format');
return;
}
let offset = 0;
const decoder = new TextDecoder('utf-8');
this.header = {
magic: view.getInt32(offset, isLittleEndianFile),
x: view.getInt32((offset += 4), isLittleEndianFile),
y: view.getInt32((offset += 4), isLittleEndianFile),
z: view.getInt32((offset += 4), isLittleEndianFile),
filename: decoder.decode(new Uint8Array(this.data, (offset += 4), 256)).replace(/\0+$/, ''),
subject: decoder.decode(new Uint8Array(this.data, (offset += 256), 256)).replace(/\0+$/, ''),
direction: decoder.decode(new Uint8Array(this.data, (offset += 256), 4)).replace(/\0+$/, ''),
date: view.getUint32((offset += 4), isLittleEndianFile),
fov: view.getFloat64((offset += 4), isLittleEndianFile),
weight: view.getFloat64((offset += 8), isLittleEndianFile),
ax: view.getFloat64((offset += 8), isLittleEndianFile),
ay: view.getFloat64((offset += 8), isLittleEndianFile),
az: view.getFloat64((offset += 8), isLittleEndianFile),
ox: view.getFloat64((offset += 8), isLittleEndianFile),
oy: view.getFloat64((offset += 8), isLittleEndianFile),
oz: view.getFloat64((offset += 8), isLittleEndianFile),
dlen: view.getInt32((offset += 8), isLittleEndianFile),
dth: view.getInt32((offset += 4), isLittleEndianFile),
memo: decoder.decode(new Uint8Array(this.data, (offset += 4), 256)).replace(/\0+$/, ''),
};
// swap byte order if endian is not matched
if ((this.isBigEndian() && isLittleEndianFile) || (!this.isBigEndian() && !isLittleEndianFile)) {
const start = 864;
const end = start + this.header.dlen * 4 * 3;
for (let i = start; i < end; i += 4) {
const data = new Uint8Array(this.data, i, 4);
data.reverse();
}
}
this.xposView = new Int32Array(this.data, 864, this.header.dlen);
this.yposView = new Int32Array(this.data, 864 + this.header.dlen * 4, this.header.dlen);
this.zposView = new Int32Array(this.data, 864 + this.header.dlen * 8, this.header.dlen);
this.img3dView = new Uint8ClampedArray(this.data, 864 + this.header.dlen * 12, this.header.x * this.header.y * this.header.z);
// set image generation offset
this.imageSize = Math.ceil(Math.max(this.header.x, this.header.y, this.header.z) * Math.sqrt(3.0)) + 1;
this.centerX = (this.imageSize - 1) / 2.0;
this.centerY = (this.imageSize - 1) / 2.0;
this.centerZ = (this.imageSize - 1) / 2.0;
this.ox = (this.header.x - 1) / 2.0;
this.oy = (this.header.y - 1) / 2.0;
this.oz = (this.header.z - 1) / 2.0;
}
}
export default M3D;

21
tsconfig.json Normal file
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@ -0,0 +1,21 @@
{
"compilerOptions": {
"target": "es6",
"module": "umd",
"lib": ["es6", "es2016", "es2017", "dom"],
"sourceMap": true,
"outDir": "dist/lib",
"declarationDir": "dist/types",
"strict": true,
"moduleResolution": "node",
"baseUrl": "src",
"declaration": true,
"experimentalDecorators": true,
"emitDecoratorMetadata": true,
"forceConsistentCasingInFileNames": true,
"typeRoots": ["node_modules/@types"]
},
"include": ["src/**/*"],
"exclude": ["dist", "node_modules"],
"compileOnSave": false
}

859
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View File

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prelude-ls "^1.2.1"
type-check "~0.4.0"
lodash.merge@^4.6.2:
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yallist "^4.0.0"
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picomatch "^2.3.1"
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wrappy "1"
optionator@^0.9.1:
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fast-levenshtein "^2.0.6"
levn "^0.4.1"
prelude-ls "^1.2.1"
type-check "^0.4.0"
word-wrap "^1.2.3"
parent-module@^1.0.0:
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callsites "^3.0.0"
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prettier-linter-helpers@^1.0.0:
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fast-diff "^1.1.2"
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glob "^7.1.3"
run-parallel@^1.1.9:
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semver@^7.3.7:
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lru-cache "^6.0.0"
shebang-command@^2.0.0:
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has-flag "^4.0.0"
text-table@^0.2.0:
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tslib@^1.8.1:
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type-check@^0.4.0, type-check@~0.4.0:
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