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3 changed files with 10 additions and 34 deletions

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@ -11,26 +11,19 @@ mvn package
## run
```shell
./target/dist/bin/bioformats-imageinfo "[OPTION]" "[path to image file]"
./target/dist/bin/bioformats-imageinfo "[path to image file]"
```
### run by jar
```shell
java -jar ./target/dist/lib/bioformats-imageinfo-1.2.4.jar "[OPTION]" "[path to image file]"
java -jar ./target/dist/lib/bioformats-imageinfo-1.2.3.jar "[path to image file]"
```
### run by fat jar
```shell
java -jar ./target/bioformats-imageinfo-1.2.4-jar-with-dependencies.jar "[OPTION]" "[path to image file]"
```
### OPTION
```shell
-M output metadata
-T output thumbnail
java -jar ./target/bioformats-imageinfo-1.2.3-jar-with-dependencies.jar "[path to image file]"
```
## library usage

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@ -5,7 +5,7 @@
<modelVersion>4.0.0</modelVersion>
<groupId>jp.riken.neurodata.tools.BioFormatsImageInfo</groupId>
<artifactId>bioformats-imageinfo</artifactId>
<version>1.2.4</version>
<version>1.2.3</version>
<name>bioformats-imageinfo</name>
<url>https://neurodata.riken.jp</url>

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@ -248,34 +248,17 @@ public class BioFormatsImageInfo {
boolean status = true;
String message = "";
String format = "";
boolean metadataON = true;
boolean thumbnailON = true;
String path = "";
final Map<String, Object> metadata = new LinkedHashMap<String, Object>();
final Map<String, Object> thumbnail = new LinkedHashMap<String, Object>();
if (args.length == 1) {
path = args[0];
} else if (args.length == 2) {
if (args[0].startsWith("-")) {
metadataON = args[0].toUpperCase().contains("M");
thumbnailON = args[0].toUpperCase().contains("T");
}
path = args[1];
} else {
if (args.length != 1) {
status = false;
message = "invalid parameters";
message += "\nUsage ./target/dist/bin/bioformats-imageinfo \"[OPTION]\" \"[path to image file]\"";
message += "\n-M output metadata\n-T output thumbnail";
}
if (status) {
message = "filename argument required";
} else {
final String path = args[0];
try {
DebugTools.enableLogging("OFF");
if (metadataON) {
format = readMetadata(path, metadata);
}
if (thumbnailON) {
BioFormatsImageThumbnail.readThumbnail(path, thumbnail);
}
format = readMetadata(path, metadata);
BioFormatsImageThumbnail.readThumbnail(path, thumbnail);
} catch (Throwable t) {
status = false;
message = t.getMessage();