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13
README.md
13
README.md
@ -11,19 +11,26 @@ mvn package
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## run
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```shell
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./target/dist/bin/bioformats-imageinfo "[path to image file]"
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./target/dist/bin/bioformats-imageinfo "[OPTION]" "[path to image file]"
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```
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### run by jar
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```shell
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java -jar ./target/dist/lib/bioformats-imageinfo-1.2.3.jar "[path to image file]"
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java -jar ./target/dist/lib/bioformats-imageinfo-1.2.4.jar "[OPTION]" "[path to image file]"
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```
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### run by fat jar
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```shell
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java -jar ./target/bioformats-imageinfo-1.2.3-jar-with-dependencies.jar "[path to image file]"
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java -jar ./target/bioformats-imageinfo-1.2.4-jar-with-dependencies.jar "[OPTION]" "[path to image file]"
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```
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### OPTION
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```shell
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-M output metadata
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-T output thumbnail
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```
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## library usage
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2
pom.xml
2
pom.xml
@ -5,7 +5,7 @@
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<modelVersion>4.0.0</modelVersion>
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<groupId>jp.riken.neurodata.tools.BioFormatsImageInfo</groupId>
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<artifactId>bioformats-imageinfo</artifactId>
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<version>1.2.3</version>
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<version>1.2.4</version>
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<name>bioformats-imageinfo</name>
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<url>https://neurodata.riken.jp</url>
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@ -248,17 +248,34 @@ public class BioFormatsImageInfo {
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boolean status = true;
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String message = "";
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String format = "";
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boolean metadataON = true;
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boolean thumbnailON = true;
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String path = "";
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final Map<String, Object> metadata = new LinkedHashMap<String, Object>();
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final Map<String, Object> thumbnail = new LinkedHashMap<String, Object>();
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if (args.length != 1) {
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status = false;
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message = "filename argument required";
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if (args.length == 1) {
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path = args[0];
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} else if (args.length == 2) {
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if (args[0].startsWith("-")) {
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metadataON = args[0].toUpperCase().contains("M");
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thumbnailON = args[0].toUpperCase().contains("T");
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}
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path = args[1];
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} else {
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final String path = args[0];
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status = false;
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message = "invalid parameters";
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message += "\nUsage ./target/dist/bin/bioformats-imageinfo \"[OPTION]\" \"[path to image file]\"";
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message += "\n-M output metadata\n-T output thumbnail";
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}
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if (status) {
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try {
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DebugTools.enableLogging("OFF");
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format = readMetadata(path, metadata);
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BioFormatsImageThumbnail.readThumbnail(path, thumbnail);
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if (metadataON) {
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format = readMetadata(path, metadata);
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}
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if (thumbnailON) {
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BioFormatsImageThumbnail.readThumbnail(path, thumbnail);
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}
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} catch (Throwable t) {
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status = false;
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message = t.getMessage();
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