51 lines
1.1 KiB
Markdown
51 lines
1.1 KiB
Markdown
# BioFormatsImageInfo
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Metadata extraction tool based on Bio-Formats
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## make package
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```shell
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mvn package
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```
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## run
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```shell
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./target/dist/bin/bioformats-imageinfo "[path to image file]"
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```
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### run by jar
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```shell
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java -jar ./target/dist/lib/bioformats-imageinfo-1.2.1.jar "[path to image file]"
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```
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### run by fat jar
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```shell
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java -jar ./target/bioformats-imageinfo-1.2.1-jar-with-dependencies.jar "[path to image file]"
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```
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## library usage
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```java
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import java.util.LinkedHashMap;
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import java.util.Map;
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import jp.riken.neurodata.tools.BioFormatsImageInfo;
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import jp.riken.neurodata.tools.BioFormatsImageException;
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import jp.riken.neurodata.tools.BioFormatsImageThumbnail;
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String path = "[path to image file]";
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String format = "";
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Map<String, Object> metadata = new LinkedHashMap<String, Object>();
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Map<String, Object> thumbnail = new LinkedHashMap<String, Object>();
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try {
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format = BioFormatsImageInfo.readMetadata(path, metadata);
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BioFormatsImageThumbnail.readThumbnail(path, thumbnail);
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} catch (BioFormatsImageException e) {
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// error occurred
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e.printStackTrace();
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}
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```
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