updated auth token handling using new users api.
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ac34a26b02
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17
.cspell.json
17
.cspell.json
@ -1,10 +1,15 @@
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{
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"version": "0.2",
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"language": "en,en-gb",
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"ignoreWords": ["getframe", "pydantic", "UNLCK"],
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"words": ["chacl", "mdrs", "mdrsclient", "neurodata", "Neuroinformatics", "RIKEN"],
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"ignorePaths": [
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".env",
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"__pycache__"
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]
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"ignoreWords": ["getframe", "pycache", "pydantic", "UNLCK"],
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"words": [
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"chacl",
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"kikan",
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"mdrs",
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"mdrsclient",
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"neurodata",
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"Neuroinformatics",
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"RIKEN"
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],
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"ignorePaths": [".env", "__pycache__"]
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}
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@ -1 +1 @@
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1.2.0
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1.3.0
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@ -1,11 +1,11 @@
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from mdrsclient.api.file import FileApi
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from mdrsclient.api.folder import FolderApi
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from mdrsclient.api.laboratory import LaboratoryApi
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from mdrsclient.api.user import UserApi
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from mdrsclient.api.users import UsersApi
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__all__ = [
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"FileApi",
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"FolderApi",
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"LaboratoryApi",
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"UserApi",
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"UsersApi",
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]
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@ -16,27 +16,55 @@ class UserAuthResponse(Token):
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laboratories: list[Laboratory] = field(default_factory=list)
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class UserApi(BaseApi):
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@dataclass(frozen=True)
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class UsersCurrentResponseLaboratory:
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id: int
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name: str
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role: int
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@dataclass(frozen=True)
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class UsersCurrentResponse:
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id: int
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username: str
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full_name: str
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email: str
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laboratories: list[UsersCurrentResponseLaboratory]
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is_staff: bool
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is_active: bool
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is_superuser: bool
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is_reviewer: bool
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last_login: str # ISO8601
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date_joined: str # ISO8601
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class UsersApi(BaseApi):
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ENTRYPOINT: Final[str] = "v2/"
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def auth(self, username: str, password: str) -> tuple[User, Token]:
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def current(self) -> User:
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# print(self.__class__.__name__ + "::" + sys._getframe().f_code.co_name)
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url = self.ENTRYPOINT + "auth/"
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url = self.ENTRYPOINT + "users/current/"
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response = self.connection.get(url)
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self._raise_response_error(response)
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obj = TypeAdapter(UsersCurrentResponse).validate_python(response.json())
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laboratory_ids = list(map(lambda x: x.id, obj.laboratories))
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user = User(id=obj.id, username=obj.username, laboratory_ids=laboratory_ids, is_reviewer=obj.is_reviewer)
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return user
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def token(self, username: str, password: str) -> Token:
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# print(self.__class__.__name__ + "::" + sys._getframe().f_code.co_name)
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url = self.ENTRYPOINT + "users/token/"
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data: dict[str, str | int] = {"username": username, "password": password}
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response = self.connection.post(url, data=data)
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if response.status_code == requests.codes.unauthorized:
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raise UnauthorizedException("Invalid username or password.")
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self._raise_response_error(response)
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obj = TypeAdapter(UserAuthResponse).validate_python(response.json())
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token = Token(access=obj.access, refresh=obj.refresh)
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laboratory_ids = list(map(lambda x: x.id, obj.laboratories))
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is_reviewer = obj.is_reviewer if obj.is_reviewer is not None else False
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user = User(id=token.user_id, username=username, laboratory_ids=laboratory_ids, is_reviewer=is_reviewer)
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return (user, token)
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token = TypeAdapter(Token).validate_python(response.json())
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return token
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def refresh(self, token: Token) -> Token:
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def tokenRefresh(self, token: Token) -> Token:
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# print(self.__class__.__name__ + "::" + sys._getframe().f_code.co_name)
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url = self.ENTRYPOINT + "refresh/"
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url = self.ENTRYPOINT + "users/token/refresh/"
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data: dict[str, str | int] = {"refresh": token.refresh}
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response = self.connection.post(url, data=data)
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if response.status_code == requests.codes.unauthorized:
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@ -1,4 +1,4 @@
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from mdrsclient.api.user import UserApi
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from mdrsclient.api.users import UsersApi
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from mdrsclient.connection import MDRSConnection
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from mdrsclient.exceptions import UnauthorizedException
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@ -8,9 +8,9 @@ def token_check(connection: MDRSConnection) -> None:
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connection.lock.acquire()
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if connection.token is not None:
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if connection.token.is_refresh_required:
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user_api = UserApi(connection)
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user_api = UsersApi(connection)
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try:
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connection.token = user_api.refresh(connection.token)
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connection.token = user_api.tokenRefresh(connection.token)
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except UnauthorizedException:
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connection.logout()
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elif connection.token.is_expired:
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@ -2,7 +2,7 @@ import getpass
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from argparse import Namespace
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from typing import Any
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from mdrsclient.api import UserApi
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from mdrsclient.api import UsersApi
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from mdrsclient.commands.base import BaseCommand
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from mdrsclient.config import ConfigFile
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from mdrsclient.connection import MDRSConnection
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@ -30,8 +30,10 @@ class LoginCommand(BaseCommand):
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if config.url is None:
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raise MissingConfigurationException(f"Remote host `{remote}` is not found.")
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connection = MDRSConnection(config.remote, config.url)
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user_api = UserApi(connection)
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(user, token) = user_api.auth(username, password)
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print("Login Successful")
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connection.user = user
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user_api = UsersApi(connection)
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token = user_api.token(username, password)
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connection.token = token
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user = user_api.current()
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connection.user = user
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print(user)
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print("Login Successful")
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@ -90,7 +90,7 @@ class LsCommand(BaseCommand):
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for key in label.keys():
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length[key] = len(label[key]) if not context.is_quick else 0
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for sub_folder in folder.sub_folders:
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sub_laboratory = context.connection.laboratories.find_by_id(sub_folder.lab_id)
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sub_laboratory = context.connection.laboratories.find_by_id(sub_folder.laboratory_id)
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sub_laboratory_name = sub_laboratory.name if sub_laboratory is not None else "(invalid)"
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length["acl"] = max(length["acl"], len(sub_folder.access_level_name))
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length["laboratory"] = max(length["laboratory"], len(sub_laboratory_name))
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@ -118,7 +118,7 @@ class LsCommand(BaseCommand):
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print("-" * len(header.expandtabs()))
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for sub_folder in sorted(folder.sub_folders, key=lambda x: x.name):
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sub_laboratory_name = cls._laboratory_name(context, sub_folder.lab_id)
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sub_laboratory_name = cls._laboratory_name(context, sub_folder.laboratory_id)
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print(
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f"{'[d]':{length['type']}}\t{sub_folder.access_level_name:{length['acl']}}\t"
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f"{sub_laboratory_name:{length['laboratory']}}\t{sub_folder.lock_name:{length['size']}}\t"
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@ -151,13 +151,14 @@ class LsCommand(BaseCommand):
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"name": folder.name,
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"access_level": folder.access_level_name,
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"lock": folder.lock,
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"laboratory": cls._laboratory_name(context, folder.lab_id),
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"laboratory": cls._laboratory_name(context, folder.laboratory_id),
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"description": folder.description,
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"created_at": folder.created_at,
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"updated_at": folder.updated_at,
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}
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if isinstance(folder, Folder):
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folder_api = FolderApi(context.connection)
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print(folder.name)
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data["metadata"] = folder_api.metadata(folder.id)
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if context.is_recursive:
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sub_folders: list[dict[str, Any]] = []
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@ -49,7 +49,7 @@ class FolderSimple:
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name: str
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access_level: int
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lock: bool
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lab_id: int
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laboratory_id: int
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description: str
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created_at: str
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updated_at: str
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@ -1,6 +1,6 @@
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[tool.poetry]
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name = "mdrs-client-python"
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version = "1.2.0"
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version = "1.3.0"
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description = "The mdrs-client-python is python library and a command-line client for up- and downloading files to and from MDRS based repository."
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authors = ["Yoshihiro OKUMURA <yoshihiro.okumura@riken.jp>"]
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license = "MIT"
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@ -24,17 +24,17 @@ packages = [
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python = "^3.10"
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requests = "^2.31.0"
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python-dotenv = "^1.0.0"
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pydantic = "^2.4.2"
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pydantic-settings = "^2.0.3"
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pydantic = "^2.5.2"
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pydantic-settings = "^2.1.0"
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PyJWT = "^2.8.0"
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validators = "^0.22.0"
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[tool.poetry.group.dev.dependencies]
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black = "^23.9.1"
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black = "^23.11.0"
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flake8 = "^6.1.0"
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Flake8-pyproject = "^1.2.3"
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isort = "^5.12.0"
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pyright = "^1.1.329"
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pyright = "^1.1.339"
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[tool.poetry.scripts]
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mdrs = 'mdrsclient.__main__:main'
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