A command line client for MDRS (Multiomics Data Repository System)

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README.md

mdrs-client-python

The mdrs-client-python is python library and a command-line client for up- and downloading files to and from MDRS based repository.

Installing

poetry install

Example Usage

config create

Create remote host configuration

mdrs config create neurodata https://neurodata.riken.jp/api

mdrs login neurodata:
Username: (enter your login name)
Password: (enter your password)

mdrs login -u USERNAME -p PASSWORD neurodata:

logout

Logout from remote host

mdrs logout neurodata:

whoami

Print current user name

mdrs whoami neurodata:

labs

List all laboratories

mdrs labs neurodata:

ls

List the folder contents

mdrs ls neurodata:/NIU/Repository/
mdrs ls -p SHARING_PASSWORD neurodata:/NIU/Repository/PW_Open/
mdrs ls -r neurodata:/NIU/Repository/Dataset1/
mdrs ls -J -r neurodata:/NIU/Repository/Dataset1/

mkdir

Create a new folder

mdrs mkdir neurodata:/NIU/Repository/TEST

upload

Upload the file or directory

mdrs upload ./sample.dat neurodata:/NIU/Repository/TEST/
mdrs upload -r ./dataset neurodata:/NIU/Repository/TEST/
mdrs upload -r --skip-if-exists ./dataset neurodata:/NIU/Repository/TEST/

download

Download the file or folder

mdrs download neurodata:/NIU/Repository/TEST/sample.dat ./
mdrs download -r neurodata:/NIU/Repository/TEST/dataset/ ./
mdrs download -p SHARING_PASSWORD neurodata:/NIU/Repository/PW_Open/Readme.dat ./
mdrs download -r --exclude /NIU/Repository/TEST/dataset/skip neurodata:/NIU/Repository/TEST/dataset/ ./
mdrs download -r --skip-if-exists neurodata:/NIU/Repository/TEST/dataset/ ./

mv

Move or rename the file or folder

mdrs mv neurodata:/NIU/Repository/TEST/sample.dat neurodata:/NIU/Repository/TEST2/sample2.dat
mdrs mv neurodata:/NIU/Repository/TEST/dataset neurodata:/NIU/Repository/TEST2/

cp

Copy the file and folder

mdrs cp neurodata:/NIU/Repository/TEST/sample.dat neurodata:/NIU/Repository/TEST2/sample2.dat
mdrs cp -r neurodata:/NIU/Repository/TEST/dataset neurodata:/NIU/Repository/TEST2/

rm

Remove the file or folder

mdrs rm neurodata:/NIU/Repository/TEST/sample.dat
mdrs rm -r neurodata:/NIU/Repository/TEST/dataset

chacl

Change the folder access level

mdrs chacl private neurodata:/NIU/Repository/Private
mdrs chacl cbs_open -r neurodata:/NIU/Repository/CBS_Open
mdrs chacl pw_open -r -p SHARING_PASSWORD neurodata:/NIU/Repository/PW_Open

metadata

Get a folder metadata

mdrs metadata neurodata:/NIU/Repository/TEST/
mdrs metadata -p SHARING_PASSWORD neurodata:/NIU/Repository/PW_Open/

file-metadata

Get the file metadata

mdrs file-metadata neurodata:/NIU/Repository/TEST/dataset/sample.dat
mdrs file-metadata -p SHARING_PASSWORD neurodata:/NIU/Repository/PW_Open/Readme.txt

help

Show the help message and exit

mdrs -h