fix(download): retrieve full folder to resolve type error

Retrieve the full Folder object from FoldersApi instead of using the
FolderSimple returned by find_sub_folder when resolving DOI subfolders.
This fixes a type checker error under the upgraded pyright, and avoids
a potential AttributeError at runtime due to FolderSimple lacking the
path attribute.

Also upgrade dependencies and bump version to 1.3.16 in pyproject.toml.

README.md

@@ -18,6 +18,32 @@ Create remote host configuration
 mdrs config create neurodata https://neurodata.riken.jp/api
 ```
 
+### config update
+
+Update the URL of a registered remote host.
+
+```shell
+mdrs config update neurodata https://neurodata.riken.jp/api
+```
+
+### config list
+
+List registered remote hosts.
+
+```shell
+mdrs config list
+mdrs config ls
+```
+
+### config delete
+
+Remove a registered remote host.
+
+```shell
+mdrs config delete neurodata
+mdrs config rm neurodata
+```
+
 ### login
 
 Login to remote host
@@ -56,13 +82,17 @@ mdrs labs neurodata:
 
 ### ls
 
-List the folder contents
+List the folder contents. You can also specify a DOI path in the form `remote:10.xxxx/yyy.ID[/optional/subpath]`.
 
 ```shell
 mdrs ls neurodata:/NIU/Repository/
 mdrs ls -p SHARING_PASSWORD neurodata:/NIU/Repository/PW_Open/
 mdrs ls -r neurodata:/NIU/Repository/Dataset1/
 mdrs ls -J -r neurodata:/NIU/Repository/Dataset1/
+
+# DOI access examples:
+mdrs ls neurodata:10.60178/cbs.20260429-001
+mdrs ls "neurodata:10.60178/cbs.20260429-001/Figure 1"
 ```
 
 ### mkdir
@@ -85,7 +115,7 @@ mdrs upload -r --skip-if-exists ./dataset neurodata:/NIU/Repository/TEST/
 
 ### download
 
-Download the file or folder
+Download the file or folder. You can also specify a DOI path.
 
 ```shell
 mdrs download neurodata:/NIU/Repository/TEST/sample.dat ./
@@ -93,6 +123,10 @@ mdrs download -r neurodata:/NIU/Repository/TEST/dataset/ ./
 mdrs download -p SHARING_PASSWORD neurodata:/NIU/Repository/PW_Open/Readme.dat ./
 mdrs download -r --exclude /NIU/Repository/TEST/dataset/skip neurodata:/NIU/Repository/TEST/dataset/ ./
 mdrs download -r --skip-if-exists neurodata:/NIU/Repository/TEST/dataset/ ./
+
+# DOI access examples:
+mdrs download neurodata:10.60178/cbs.20260429-001/README_NeuroData.md ./
+mdrs download -r "neurodata:10.60178/cbs.20260429-001/Figure 1" ./
 ```
 
 ### mv
@@ -134,20 +168,34 @@ mdrs chacl pw_open -r -p SHARING_PASSWORD neurodata:/NIU/Repository/PW_Open
 
 ### metadata
 
-Get a folder metadata
+Get a folder metadata. You can also specify a DOI path.
 
 ```shell
 mdrs metadata neurodata:/NIU/Repository/TEST/
 mdrs metadata -p SHARING_PASSWORD neurodata:/NIU/Repository/PW_Open/
+
+# DOI access examples:
+mdrs metadata neurodata:10.60178/cbs.20260429-001
 ```
 
 ### file-metadata
 
-Get the file metadata
+Get the file metadata. You can also specify a DOI path.
 
 ```shell
 mdrs file-metadata neurodata:/NIU/Repository/TEST/dataset/sample.dat
 mdrs file-metadata -p SHARING_PASSWORD neurodata:/NIU/Repository/PW_Open/Readme.txt
+
+# DOI access examples:
+mdrs file-metadata "neurodata:10.60178/cbs.20260429-001/Figure 1/Figure1v3.pdf"
+```
+
+### version
+
+Show the tool name and version number
+
+```shell
+mdrs version
 ```
 
 ### help

mdrsclient/VERSION

@@ -1 +0,0 @@
-1.3.13

mdrsclient/__main__.py

@@ -17,6 +17,7 @@ from mdrsclient.commands import (
     MvCommand,
     RmCommand,
     UploadCommand,
+    VersionCommand,
     WhoamiCommand,
 )
 from mdrsclient.exceptions import MDRSException
@@ -29,6 +30,7 @@ def main() -> None:
     parsers = parser.add_subparsers(title="subcommands")
 
     ConfigCommand.register(parsers)
+    VersionCommand.register(parsers)
     LoginCommand.register(parsers)
     LogoutCommand.register(parsers)
     WhoamiCommand.register(parsers)

mdrsclient/__version__.py

@@ -1,8 +1,5 @@
-import os
+from importlib.metadata import version
 
-here = os.path.realpath(os.path.dirname(__file__))
+__version__ = version("mdrs-client-python")
-
-with open(os.path.join(here, "VERSION")) as version_file:
-    __version__ = version_file.read().strip()
 
 __all__ = ["__version__"]

mdrsclient/api/__init__.py

@@ -1,9 +1,11 @@
+from mdrsclient.api.doi import DoiApi
 from mdrsclient.api.files import FilesApi
 from mdrsclient.api.folders import FoldersApi
 from mdrsclient.api.laboratories import LaboratoriesApi
 from mdrsclient.api.users import UsersApi
 
 __all__ = [
+    "DoiApi",
     "FilesApi",
     "FoldersApi",
     "LaboratoriesApi",

mdrsclient/api/base.py

@@ -5,12 +5,7 @@ from pydantic import TypeAdapter
 from requests import Response
 
 from mdrsclient.connection import MDRSConnection
-from mdrsclient.exceptions import (
+from mdrsclient.exceptions import BadRequestException, ForbiddenException, UnauthorizedException, UnexpectedException
-    BadRequestException,
-    ForbiddenException,
-    UnauthorizedException,
-    UnexpectedException,
-)
 from mdrsclient.models.error import DRFStandardizedErrors
 
 

mdrsclient/api/doi.py

@@ -0,0 +1,40 @@
+from typing import Final
+
+from pydantic import TypeAdapter
+from pydantic.dataclasses import dataclass
+
+from mdrsclient.api.base import BaseApi
+from mdrsclient.api.utils import token_check
+
+
+@dataclass(frozen=True)
+class DoiFolderRef:
+    """Nested folder reference returned inside a DOI response.
+
+    The DOI endpoint only returns the folder ``id``; ``laboratory_id`` must be
+    obtained by subsequently calling the folder retrieve endpoint.
+    """
+
+    id: str
+
+
+@dataclass(frozen=True)
+class DoiResponse:
+    """Response from GET v3/doi/{id}/."""
+
+    # The internal DOI suffix ID returned as a string (e.g. "20260429-001").
+    id: str
+    doi: str
+    folder: DoiFolderRef
+
+
+class DoiApi(BaseApi):
+    ENTRYPOINT: Final[str] = "v3/doi/"
+
+    def retrieve(self, doi_id: str) -> DoiResponse:
+        """Retrieve the folder associated with a DOI suffix ID (GET v3/doi/{id}/)."""
+        url = self.ENTRYPOINT + doi_id + "/"
+        token_check(self.connection)
+        response = self.connection.get(url)
+        self._raise_response_error(response)
+        return TypeAdapter(DoiResponse).validate_python(response.json())

mdrsclient/api/files.py

@@ -1,6 +1,7 @@
 import mimetypes
 import os
 from typing import Any, Final
+from unicodedata import normalize
 
 from pydantic import TypeAdapter
 from pydantic.dataclasses import dataclass
@@ -53,7 +54,10 @@ class FilesApi(BaseApi):
         try:
             with open(os.path.realpath(path), mode="rb") as fp:
                 data = MultipartEncoder(
-                    fields={"folder_id": folder_id, "file": (os.path.basename(path), fp, self._get_mime_type(path))}
+                    fields={
+                        "folder_id": folder_id,
+                        "file": (normalize("NFC", os.path.basename(path)), fp, self._get_mime_type(path)),
+                    }
                 )
                 response = self.connection.post(url, data=data, headers={"Content-Type": data.content_type})
                 self._raise_response_error(response)
@@ -75,7 +79,9 @@ class FilesApi(BaseApi):
             # update file body
             try:
                 with open(os.path.realpath(path), mode="rb") as fp:
-                    data = MultipartEncoder(fields={"file": (os.path.basename(path), fp, self._get_mime_type(path))})
+                    data = MultipartEncoder(
+                        fields={"file": (normalize("NFC", os.path.basename(path)), fp, self._get_mime_type(path))}
+                    )
                     response = self.connection.put(url, data=data, headers={"Content-Type": data.content_type})
             except OSError:
                 raise UnexpectedException(f"Could not open `{path}` file.")

mdrsclient/commands/__init__.py

@@ -12,6 +12,7 @@ from mdrsclient.commands.mkdir import MkdirCommand
 from mdrsclient.commands.mv import MvCommand
 from mdrsclient.commands.rm import RmCommand
 from mdrsclient.commands.upload import UploadCommand
+from mdrsclient.commands.version import VersionCommand
 from mdrsclient.commands.whoami import WhoamiCommand
 
 __all__ = [
@@ -29,5 +30,6 @@ __all__ = [
     "MvCommand",
     "RmCommand",
     "UploadCommand",
+    "VersionCommand",
     "WhoamiCommand",
 ]

mdrsclient/commands/base.py

@@ -1,9 +1,10 @@
+import os
 import re
 from abc import ABC, abstractmethod
 from typing import Any
 from unicodedata import normalize
 
-from mdrsclient.api import FilesApi, FoldersApi, LaboratoriesApi
+from mdrsclient.api import DoiApi, FilesApi, FoldersApi, LaboratoriesApi
 from mdrsclient.config import ConfigFile
 from mdrsclient.connection import MDRSConnection
 from mdrsclient.exceptions import (
@@ -95,3 +96,172 @@ class BaseCommand(ABC):
             laboratory = folder_array.pop(0)
             folder = "/" + "/".join(folder_array)
         return (remote_host, laboratory, folder)
+
+    # ------------------------------------------------------------------
+    # DOI helpers
+    # ------------------------------------------------------------------
+
+    @staticmethod
+    def _is_doi(path_component: str) -> bool:
+        """Return True if path_component looks like a DOI string.
+
+        A DOI is recognised as a string that starts with ``10.`` and
+        contains a ``/``.
+        """
+        return path_component.startswith("10.") and "/" in path_component
+
+    @staticmethod
+    def _doi_suffix_id(doi: str) -> str:
+        """Extract the internal system ID from a full DOI string.
+
+        MDRS uses the segment after the last ``.`` in the suffix (the part
+        after the ``/``) as its identifier.
+        Example: ``10.xxxx/prefix.20230511-001`` → ``20230511-001``.
+        If there is no ``.`` in the suffix, the whole suffix is returned.
+        Trailing slashes are stripped before processing.
+        """
+        # Strip any trailing slash first.
+        doi = doi.rstrip("/")
+        slash_pos = doi.find("/")
+        if slash_pos == -1:
+            return doi
+        suffix = doi[slash_pos + 1 :]
+        dot_pos = suffix.rfind(".")
+        return suffix[dot_pos + 1 :] if dot_pos != -1 else suffix
+
+    @staticmethod
+    def _split_doi_and_subpath(doi_with_path: str) -> tuple[str, str]:
+        """Split a DOI-with-optional-path string into (doi, subpath)."""
+        # Find the first '/' that separates registrant from suffix.
+        first_slash = doi_with_path.find("/")
+        if first_slash != -1:
+            after_suffix_start = first_slash + 1
+            after_first = doi_with_path[after_suffix_start:]
+            # Find the next '/' inside the suffix portion — this starts the subpath.
+            second_slash = after_first.find("/")
+            if second_slash != -1:
+                doi_end = after_suffix_start + second_slash
+                doi = doi_with_path[:doi_end]
+                subpath = doi_with_path[doi_end:]  # begins with "/"
+                # Treat a bare trailing slash as no subpath (root of DOI folder).
+                if subpath == "/":
+                    return (doi, "")
+                else:
+                    return (doi, subpath)
+            else:
+                # No second slash — the whole string is the DOI, no subpath.
+                return (doi_with_path, "")
+        else:
+            return (doi_with_path, "")
+
+    @classmethod
+    def _parse_doi_remote_host(cls, path: str) -> tuple[str, str, str]:
+        """Parse ``remote:10.xxxx/prefix.ID[/optional/sub/path]`` into ``(remote, doi, subpath)``."""
+        parts = path.split(":", 1)
+        if len(parts) != 2:
+            raise IllegalArgumentException("remote_path must be in the form 'remote:10.xxxx/prefix.ID'")
+        remote, doi_with_path = parts
+        if not cls._is_doi(doi_with_path):
+            raise IllegalArgumentException(
+                f"Path `{doi_with_path}` does not look like a DOI (must start with '10.' and contain '/')."
+            )
+        doi, subpath = cls._split_doi_and_subpath(doi_with_path)
+        return (remote, doi, subpath)
+
+    @classmethod
+    def _find_folder_by_doi(
+        cls,
+        connection: MDRSConnection,
+        doi: str,
+        password: str | None = None,
+    ) -> tuple[Folder, Laboratory]:
+        """Resolve a DOI to a (Folder, Laboratory) pair.
+
+        Calls GET v3/doi/{id}/ to look up the folder ID, retrieves the full
+        folder detail (which carries ``laboratory_id``), and resolves the
+        laboratory from that field.
+        """
+        doi_clean = doi.rstrip("/")
+        doi_id = cls._doi_suffix_id(doi_clean)
+        doi_api = DoiApi(connection)
+        doi_resp = doi_api.retrieve(doi_id)
+
+        # Verify the returned DOI matches the one supplied (case-insensitive).
+        returned_doi = doi_resp.doi.rstrip("/")
+        if returned_doi.lower() != doi_clean.lower():
+            raise IllegalArgumentException(
+                f"DOI mismatch: requested `{doi_clean}` but server returned `{returned_doi}`."
+            )
+
+        folder_api = FoldersApi(connection)
+
+        # Retrieve full folder detail directly by ID; laboratory_id is here.
+        folder = folder_api.retrieve(doi_resp.folder.id)
+
+        if folder.lock:
+            if password is None:
+                raise UnauthorizedException(f"Folder for DOI `{doi_clean}` is locked.")
+            folder_api.auth(doi_resp.folder.id, password)
+
+        # Resolve laboratory using laboratory_id from the full folder detail.
+        lab_api = LaboratoriesApi(connection)
+        labs = lab_api.list()
+        lab = labs.find_by_id(folder.laboratory_id)
+        if lab is None:
+            raise UnexpectedException(f"Laboratory with id {folder.laboratory_id} not found.")
+
+        connection.laboratories = labs
+        return (folder, lab)
+
+    @classmethod
+    def _resolve_folder(
+        cls,
+        connection: MDRSConnection,
+        remote_path: str,
+        password: str | None = None,
+    ) -> tuple[Folder, Laboratory]:
+        """Resolve any remote path (normal or DOI) into a (Folder, Laboratory) pair."""
+        path_component = remote_path.split(":", 1)[1] if ":" in remote_path else ""
+        if cls._is_doi(path_component):
+            remote, doi, subpath = cls._parse_doi_remote_host(remote_path)
+            doi_folder, laboratory = cls._find_folder_by_doi(connection, doi, password)
+            if not subpath:
+                return (doi_folder, laboratory)
+            else:
+                abs_path = doi_folder.path.rstrip("/") + subpath
+                folder = cls._find_folder(connection, laboratory, abs_path, password)
+                return (folder, laboratory)
+        else:
+            remote, laboratory_name, r_path = cls._parse_remote_host_with_path(remote_path)
+            laboratory = cls._find_laboratory(connection, laboratory_name)
+            folder = cls._find_folder(connection, laboratory, r_path, password)
+            return (folder, laboratory)
+
+    @classmethod
+    def _resolve_file(
+        cls,
+        connection: MDRSConnection,
+        remote_path: str,
+        password: str | None = None,
+    ) -> tuple[Folder, Laboratory, str]:
+        """Resolve a remote path pointing to a file into the parent Folder, its Laboratory, and the file's basename."""
+        path_component = remote_path.split(":", 1)[1] if ":" in remote_path else ""
+        if cls._is_doi(path_component):
+            remote, doi, subpath = cls._parse_doi_remote_host(remote_path)
+            doi_folder, laboratory = cls._find_folder_by_doi(connection, doi, password)
+            subpath_clean = subpath.rstrip("/")
+            if not subpath_clean:
+                raise IllegalArgumentException("DOI path must point to a file, not a folder.")
+            r_dirname = os.path.dirname(subpath_clean)
+            r_basename = os.path.basename(subpath_clean)
+            abs_path = doi_folder.path.rstrip("/") + r_dirname
+            parent_folder = cls._find_folder(connection, laboratory, abs_path, password)
+            return (parent_folder, laboratory, r_basename)
+        else:
+            remote, laboratory_name, r_path = cls._parse_remote_host_with_path(remote_path)
+            r_path = r_path.rstrip("/")
+            r_dirname = os.path.dirname(r_path)
+            r_basename = os.path.basename(r_path)
+            laboratory = cls._find_laboratory(connection, laboratory_name)
+            parent_folder = cls._find_folder(connection, laboratory, r_dirname, password)
+            return (parent_folder, laboratory, r_basename)

mdrsclient/commands/chacl.py

@@ -31,7 +31,7 @@ class ChaclCommand(BaseCommand):
 
     @classmethod
     def chacl(cls, remote_path: str, access_level: int, is_recursive: bool, password: str | None) -> None:
-        (remote, laboratory_name, r_path) = cls._parse_remote_host_with_path(remote_path)
+        remote, laboratory_name, r_path = cls._parse_remote_host_with_path(remote_path)
         r_path = r_path.rstrip("/")
         connection = cls._create_connection(remote)
         laboratory = cls._find_laboratory(connection, laboratory_name)

mdrsclient/commands/config.py

@@ -26,10 +26,11 @@ class ConfigCommand(BaseCommand):
         update_parser.set_defaults(func=cls.func_update)
         # config list
         list_parser = config_parsers.add_parser("list", help="list all the remote hosts", aliases=["ls"])
-        list_parser.add_argument("-l", "--long", help="show the api url", action="store_true")
         list_parser.set_defaults(func=cls.func_list)
         # config delete
-        delete_parser = config_parsers.add_parser("delete", help="delete an existing remote host", aliases=["remove"])
+        delete_parser = config_parsers.add_parser(
+            "delete", help="delete an existing remote host", aliases=["remove", "rm"]
+        )
         delete_parser.add_argument("remote", help="label of remote host")
         delete_parser.set_defaults(func=cls.func_delete)
 
@@ -47,8 +48,7 @@ class ConfigCommand(BaseCommand):
 
     @classmethod
     def func_list(cls, args: Namespace) -> None:
-        is_long = bool(args.long)
+        cls.list()
-        cls.list(is_long)
 
     @classmethod
     def func_delete(cls, args: Namespace) -> None:
@@ -74,13 +74,10 @@ class ConfigCommand(BaseCommand):
             config.url = url
 
     @classmethod
-    def list(cls, is_long: bool) -> None:
+    def list(cls) -> None:
         config = ConfigFile("")
         for remote, url in config.list():
-            line = f"{remote}:"
+            print(f"{remote}:\t{url}")
-            if is_long:
-                line += f"\t{url}"
-            print(line)
 
     @classmethod
     def delete(cls, remote: str) -> None:

mdrsclient/commands/cp.py

@@ -29,8 +29,8 @@ class CpCommand(BaseCommand):
 
     @classmethod
     def cp(cls, src_path: str, dest_path: str, is_recursive: bool) -> None:
-        (s_remote, s_laboratory_name, s_path) = cls._parse_remote_host_with_path(src_path)
+        s_remote, s_laboratory_name, s_path = cls._parse_remote_host_with_path(src_path)
-        (d_remote, d_laboratory_name, d_path) = cls._parse_remote_host_with_path(dest_path)
+        d_remote, d_laboratory_name, d_path = cls._parse_remote_host_with_path(dest_path)
         if s_remote != d_remote:
             raise IllegalArgumentException("Remote host mismatched.")
         if s_laboratory_name != d_laboratory_name:

mdrsclient/commands/download.py

@@ -68,7 +68,61 @@ class DownloadCommand(BaseCommand):
         password: str | None,
         excludes: list[str],
     ) -> None:
-        (remote, laboratory_name, r_path) = cls._parse_remote_host_with_path(remote_path)
+        # Detect DOI path: "remote:10.xxxx/prefix.ID[/optional/sub/path]"
+        path_component = remote_path.split(":", 1)[1] if ":" in remote_path else ""
+        if cls._is_doi(path_component):
+            remote, doi, subpath = cls._parse_doi_remote_host(remote_path)
+            connection = cls._create_connection(remote)
+            l_dirname = os.path.realpath(local_path)
+            if not os.path.isdir(l_dirname):
+                raise IllegalArgumentException(f"Local directory `{local_path}` not found.")
+            doi_folder, laboratory = cls._find_folder_by_doi(connection, doi, password)
+
+            subpath_clean = subpath.rstrip("/")
+            if not subpath_clean:
+                folder = doi_folder
+                is_folder = True
+            else:
+                r_dirname = os.path.dirname(subpath_clean)
+                r_basename = os.path.basename(subpath_clean)
+                abs_parent_path = doi_folder.path.rstrip("/") + r_dirname
+                r_parent_folder = cls._find_folder(connection, laboratory, abs_parent_path, password)
+                r_parent_files = cls._find_files(connection, r_parent_folder.id)
+                file = find_file(r_parent_files, r_basename)
+                if file is not None:
+                    if cls.__check_excludes(excludes, laboratory, r_parent_folder, file):
+                        return
+                    context = DownloadContext(False, is_skip_if_exists, [])
+                    l_path = os.path.join(l_dirname, r_basename)
+                    context.files.append(DownloadFileInfo(file, l_path))
+                    cls.__multiple_download(connection, context)
+                    return
+                else:
+                    folder_simple = r_parent_folder.find_sub_folder(r_basename)
+                    if folder_simple is None:
+                        raise IllegalArgumentException(f"File or folder `{subpath_clean}` not found.")
+                    folder = FoldersApi(connection).retrieve(folder_simple.id)
+                    is_folder = True
+
+            # For a DOI target the whole folder is the download target.
+            if not is_recursive:
+                # Non-recursive: download only the files at the top level of the DOI folder.
+                files = cls._find_files(connection, folder.id)
+                context = DownloadContext(False, is_skip_if_exists, [])
+                for file in files:
+                    if cls.__check_excludes(excludes, laboratory, folder, file):
+                        continue
+                    l_path = os.path.join(l_dirname, file.name)
+                    context.files.append(DownloadFileInfo(file, l_path))
+                cls.__multiple_download(connection, context)
+                return
+            folder_api = FoldersApi(connection)
+            cls.__multiple_download_pickup_recursive_files(
+                connection, folder_api, laboratory, folder.id, l_dirname, excludes, is_skip_if_exists
+            )
+            return
+
+        remote, laboratory_name, r_path = cls._parse_remote_host_with_path(remote_path)
         r_path = r_path.rstrip("/")
         r_dirname = os.path.dirname(r_path)
         r_basename = os.path.basename(r_path)

mdrsclient/commands/file_metadata.py

@@ -25,13 +25,9 @@ class FileMetadataCommand(BaseCommand):
 
     @classmethod
     def file_metadata(cls, remote_path: str, password: str | None) -> None:
-        (remote, laboratory_name, r_path) = cls._parse_remote_host_with_path(remote_path)
+        remote = remote_path.split(":", 1)[0] if ":" in remote_path else ""
-        r_path = r_path.rstrip("/")
-        r_dirname = os.path.dirname(r_path)
-        r_basename = os.path.basename(r_path)
         connection = cls._create_connection(remote)
-        laboratory = cls._find_laboratory(connection, laboratory_name)
+        folder, laboratory, r_basename = cls._resolve_file(connection, remote_path, password)
-        folder = cls._find_folder(connection, laboratory, r_dirname, password)
         files = cls._find_files(connection, folder.id)
         file = find_file(files, r_basename)
         if file is None:

mdrsclient/commands/ls.py

@@ -23,7 +23,7 @@ class LsCommandContext:
     laboratory: Laboratory
     password: str
     is_json: bool
-    is_quick: bool
+    is_quiet: bool
     is_recursive: bool
 
 
@@ -35,7 +35,7 @@ class LsCommand(BaseCommand):
         ls_parser.add_argument("-J", "--json", help="turn on json output", action="store_true")
         ls_parser.add_argument(
             "-q",
-            "--quick",
+            "--quiet",
             help="don't output header row. this option is forced if the -r option is specified",
             action="store_true",
         )
@@ -49,25 +49,25 @@ class LsCommand(BaseCommand):
         password = str(args.password) if args.password else None
         is_json = bool(args.json)
         is_recursive = bool(args.recursive)
-        is_quick = bool(args.quick) if not is_recursive else True
+        is_quiet = bool(args.quiet) if not is_recursive else True
-        cls.ls(remote_path, password, is_json, is_recursive, is_quick)
+        cls.ls(remote_path, password, is_json, is_recursive, is_quiet)
 
     @classmethod
-    def ls(cls, remote_path: str, password: str | None, is_json: bool, is_recursive: bool, is_quick: bool) -> None:
+    def ls(cls, remote_path: str, password: str | None, is_json: bool, is_recursive: bool, is_quiet: bool) -> None:
-        (remote, laboratory_name, r_path) = cls._parse_remote_host_with_path(remote_path)
+        remote = remote_path.split(":", 1)[0] if ":" in remote_path else ""
         connection = cls._create_connection(remote)
-        laboratory = cls._find_laboratory(connection, laboratory_name)
+        folder, laboratory = cls._resolve_folder(connection, remote_path, password)
+        laboratory_name = laboratory.name
+        files = cls._find_files(connection, folder.id)
         context = LsCommandContext(
             f"{remote}:/{laboratory_name}",
             connection,
             laboratory,
             password if password is not None else "",
             is_json,
-            is_quick,
+            is_quiet,
             is_recursive,
         )
-        folder = cls._find_folder(connection, laboratory, r_path, password)
-        files = cls._find_files(connection, folder.id)
         if context.is_json:
             cls._ls_json(context, folder, files)
         else:
@@ -89,7 +89,7 @@ class LsCommand(BaseCommand):
         }
         length: dict[str, int] = {}
         for key in label.keys():
-            length[key] = len(label[key]) if not context.is_quick else 0
+            length[key] = len(label[key]) if not context.is_quiet else 0
         for sub_folder in folder.sub_folders:
             sub_laboratory = context.connection.laboratories.find_by_id(sub_folder.laboratory_id)
             sub_laboratory_name = sub_laboratory.name if sub_laboratory is not None else "(invalid)"
@@ -114,7 +114,7 @@ class LsCommand(BaseCommand):
             print(f"{context.prefix}{folder.path}:")
             print(f"total {sum(f.size for f in files)}")
 
-        if not context.is_quick:
+        if not context.is_quiet:
             print(header)
             print("-" * len(header.expandtabs()))
 

mdrsclient/commands/metadata.py

@@ -22,10 +22,9 @@ class MetadataCommand(BaseCommand):
 
     @classmethod
     def metadata(cls, remote_path: str, password: str | None) -> None:
-        (remote, laboratory_name, r_path) = cls._parse_remote_host_with_path(remote_path)
+        remote = remote_path.split(":", 1)[0] if ":" in remote_path else ""
         connection = cls._create_connection(remote)
-        laboratory = cls._find_laboratory(connection, laboratory_name)
+        folder, laboratory = cls._resolve_folder(connection, remote_path, password)
-        folder = cls._find_folder(connection, laboratory, r_path, password)
         folder_api = FoldersApi(connection)
         metadata = folder_api.metadata(folder.id)
         print(json.dumps(metadata, ensure_ascii=False))

mdrsclient/commands/mkdir.py

@@ -23,7 +23,7 @@ class MkdirCommand(BaseCommand):
 
     @classmethod
     def mkdir(cls, remote_path: str) -> None:
-        (remote, laboratory_name, r_path) = cls._parse_remote_host_with_path(remote_path)
+        remote, laboratory_name, r_path = cls._parse_remote_host_with_path(remote_path)
         r_path = r_path.rstrip("/")
         r_dirname = os.path.dirname(r_path)
         r_basename = os.path.basename(r_path)

mdrsclient/commands/mv.py

@@ -25,8 +25,8 @@ class MvCommand(BaseCommand):
 
     @classmethod
     def mv(cls, src_path: str, dest_path: str) -> None:
-        (s_remote, s_laboratory_name, s_path) = cls._parse_remote_host_with_path(src_path)
+        s_remote, s_laboratory_name, s_path = cls._parse_remote_host_with_path(src_path)
-        (d_remote, d_laboratory_name, d_path) = cls._parse_remote_host_with_path(dest_path)
+        d_remote, d_laboratory_name, d_path = cls._parse_remote_host_with_path(dest_path)
         if s_remote != d_remote:
             raise IllegalArgumentException("Remote host mismatched.")
         if s_laboratory_name != d_laboratory_name:

mdrsclient/commands/rm.py

@@ -26,7 +26,7 @@ class RmCommand(BaseCommand):
 
     @classmethod
     def rm(cls, remote_path: str, is_recursive: bool) -> None:
-        (remote, laboratory_name, r_path) = cls._parse_remote_host_with_path(remote_path)
+        remote, laboratory_name, r_path = cls._parse_remote_host_with_path(remote_path)
         r_path = r_path.rstrip("/")
         r_dirname = os.path.dirname(r_path)
         r_basename = os.path.basename(r_path)

mdrsclient/commands/upload.py

@@ -2,6 +2,7 @@ import os
 from argparse import Namespace
 from concurrent.futures import ThreadPoolExecutor
 from typing import Any
+from unicodedata import normalize
 
 from pydantic.dataclasses import dataclass
 
@@ -48,7 +49,7 @@ class UploadCommand(BaseCommand):
 
     @classmethod
     def upload(cls, local_path: str, remote_path: str, is_recursive: bool, is_skip_if_exists: bool) -> None:
-        (remote, laboratory_name, r_path) = cls._parse_remote_host_with_path(remote_path)
+        remote, laboratory_name, r_path = cls._parse_remote_host_with_path(remote_path)
         l_path = os.path.abspath(local_path)
         if not os.path.exists(l_path):
             raise IllegalArgumentException(f"File or directory `{local_path}` not found.")
@@ -81,7 +82,7 @@ class UploadCommand(BaseCommand):
                 if folder_map.get(d_dirname) is None:
                     d_folder = folder_map[d_parent_dirname].find_sub_folder(d_basename)
                     if d_folder is None:
-                        d_folder_id = folder_api.create(d_basename, folder_map[d_parent_dirname].id)
+                        d_folder_id = folder_api.create(normalize("NFC", d_basename), folder_map[d_parent_dirname].id)
                     else:
                         d_folder_id = d_folder.id
                     print(d_dirname)

mdrsclient/commands/version.py

@@ -0,0 +1,20 @@
+from argparse import Namespace
+from typing import Any
+
+from mdrsclient.__version__ import __version__
+from mdrsclient.commands.base import BaseCommand
+
+
+class VersionCommand(BaseCommand):
+    @classmethod
+    def register(cls, parsers: Any) -> None:
+        version_parser = parsers.add_parser("version", help="show the version of this tool")
+        version_parser.set_defaults(func=cls.func)
+
+    @classmethod
+    def func(cls, args: Namespace) -> None:
+        cls.version()
+
+    @classmethod
+    def version(cls) -> None:
+        print(f"mdrs {__version__}")

mdrsclient/connection.py

@@ -92,6 +92,8 @@ class MDRSConnection:
         self.__cache.laboratories = laboratories
 
     def __build_url(self, path: str) -> str:
+        if path.startswith("http://") or path.startswith("https://"):
+            return path
         if self.url == "":
             raise MissingConfigurationException("remote host is not configured")
         return f"{self.url}/{path}"

pyproject.toml

@@ -1,12 +1,12 @@
 [tool.poetry]
 name = "mdrs-client-python"
-version = "1.3.13"
+version = "1.3.16"
 description = "The mdrs-client-python is python library and a command-line client for up- and downloading files to and from MDRS based repository."
 authors = ["Yoshihiro OKUMURA <yoshihiro.okumura@riken.jp>"]
 license = "MIT"
 readme = "README.md"
 classifiers=[
-    "Development Status :: 3 - Alpha",
+    "Development Status :: 4 - Beta",
     "Environment :: Console",
     "Intended Audience :: Developers",
     "Intended Audience :: Science/Research",
@@ -14,6 +14,7 @@ classifiers=[
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
     "Programming Language :: Python :: 3.13",
+    "Programming Language :: Python :: 3.14",
     "OSI Approved :: MIT License",
     "Topic :: Utilities",
 ]
@@ -23,20 +24,20 @@ packages = [
 
 [tool.poetry.dependencies]
 python = "^3.10"
-requests = "^2.32.3"
+requests = "^2.34.2"
 requests-toolbelt = "^1.0.0"
 python-dotenv = "^1.1.0"
-pydantic = "^2.11.4"
+pydantic = "^2.13.4"
-pydantic-settings = "^2.9.1"
+pydantic-settings = "^2.14.1"
-PyJWT = "^2.10.1"
+PyJWT = "^2.13.0"
-validators = "^0.34.0"
+validators = "^0.35.0"
 
 [tool.poetry.group.dev.dependencies]
-black = "^24.10.0"
+black = "^26.5.1"
 flake8 = "^7.2.0"
 Flake8-pyproject = "^1.2.3"
-isort = "^5.13.2"
+isort = "^8.0.1"
-pyright = "^1.1.400"
+pyright = "^1.1.401"
 
 [tool.poetry.scripts]
 mdrs = 'mdrsclient.__main__:main'