orrisroot 4283481695 fix: apply NFC normalization to filenames and folder names sent to server
On macOS, local filenames and directory names may be in NFD encoding
(decomposed Unicode). Without normalization, files and folders are
created on the server with NFD names, inconsistent with the server's
NFC convention.

Apply normalize("NFC", ...) before sending names to the server in:
- FilesApi.create(): filename in multipart upload
- FilesApi.update(): filename in multipart upload
- UploadCommand: directory name in FoldersApi.create()

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
2026-04-20 12:25:59 +09:00
2024-07-04 12:33:57 +09:00

mdrs-client-python

The mdrs-client-python is python library and a command-line client for up- and downloading files to and from MDRS based repository.

Installing

poetry install

Example Usage

config create

Create remote host configuration

mdrs config create neurodata https://neurodata.riken.jp/api

config update

Update the URL of a registered remote host.

mdrs config update neurodata https://neurodata.riken.jp/api

config list

List registered remote hosts.

mdrs config list
mdrs config ls

config delete

Remove a registered remote host.

mdrs config delete neurodata
mdrs config rm neurodata

login

Login to remote host

mdrs login neurodata:
Username: (enter your login name)
Password: (enter your password)

mdrs login -u USERNAME -p PASSWORD neurodata:

logout

Logout from remote host

mdrs logout neurodata:

whoami

Print current user name

mdrs whoami neurodata:

labs

List all laboratories

mdrs labs neurodata:

ls

List the folder contents

mdrs ls neurodata:/NIU/Repository/
mdrs ls -p SHARING_PASSWORD neurodata:/NIU/Repository/PW_Open/
mdrs ls -r neurodata:/NIU/Repository/Dataset1/
mdrs ls -J -r neurodata:/NIU/Repository/Dataset1/

mkdir

Create a new folder

mdrs mkdir neurodata:/NIU/Repository/TEST

upload

Upload the file or directory

mdrs upload ./sample.dat neurodata:/NIU/Repository/TEST/
mdrs upload -r ./dataset neurodata:/NIU/Repository/TEST/
mdrs upload -r --skip-if-exists ./dataset neurodata:/NIU/Repository/TEST/

download

Download the file or folder

mdrs download neurodata:/NIU/Repository/TEST/sample.dat ./
mdrs download -r neurodata:/NIU/Repository/TEST/dataset/ ./
mdrs download -p SHARING_PASSWORD neurodata:/NIU/Repository/PW_Open/Readme.dat ./
mdrs download -r --exclude /NIU/Repository/TEST/dataset/skip neurodata:/NIU/Repository/TEST/dataset/ ./
mdrs download -r --skip-if-exists neurodata:/NIU/Repository/TEST/dataset/ ./

mv

Move or rename the file or folder

mdrs mv neurodata:/NIU/Repository/TEST/sample.dat neurodata:/NIU/Repository/TEST2/sample2.dat
mdrs mv neurodata:/NIU/Repository/TEST/dataset neurodata:/NIU/Repository/TEST2/

cp

Copy the file and folder

mdrs cp neurodata:/NIU/Repository/TEST/sample.dat neurodata:/NIU/Repository/TEST2/sample2.dat
mdrs cp -r neurodata:/NIU/Repository/TEST/dataset neurodata:/NIU/Repository/TEST2/

rm

Remove the file or folder

mdrs rm neurodata:/NIU/Repository/TEST/sample.dat
mdrs rm -r neurodata:/NIU/Repository/TEST/dataset

chacl

Change the folder access level

mdrs chacl private neurodata:/NIU/Repository/Private
mdrs chacl cbs_open -r neurodata:/NIU/Repository/CBS_Open
mdrs chacl pw_open -r -p SHARING_PASSWORD neurodata:/NIU/Repository/PW_Open

metadata

Get a folder metadata

mdrs metadata neurodata:/NIU/Repository/TEST/
mdrs metadata -p SHARING_PASSWORD neurodata:/NIU/Repository/PW_Open/

file-metadata

Get the file metadata

mdrs file-metadata neurodata:/NIU/Repository/TEST/dataset/sample.dat
mdrs file-metadata -p SHARING_PASSWORD neurodata:/NIU/Repository/PW_Open/Readme.txt

version

Show the tool name and version number

mdrs version

help

Show the help message and exit

mdrs -h
S
Description
A command line client for MDRS (Multiomics Data Repository System)
Readme 408 KiB
Languages
Python 100%