A command line client for MDRS (Multiomics Data Repository System)

Go to file

Yoshihiro OKUMURA 837f035bc1 serialize dict to a JSON formated string.		2023-05-18 11:45:18 +09:00
.vscode	add namespace MDRS_CLIENT to customizable enviroment variables.	2023-05-11 19:01:07 +09:00
mdrsclient	serialize dict to a JSON formated string.	2023-05-18 11:45:18 +09:00
.env.default	add namespace MDRS_CLIENT to customizable enviroment variables.	2023-05-11 19:01:07 +09:00
.gitignore	first commit	2023-05-01 20:00:32 +09:00
LICENSE	first commit	2023-05-01 20:00:32 +09:00
README.md	update readme to add description of `chacl` command.	2023-05-11 17:04:05 +09:00
requirements.txt	convert newline code to 'LF`	2023-05-12 11:50:27 +09:00
setup.py	convert newline code to 'LF`	2023-05-12 11:50:27 +09:00
VERSION	first commit	2023-05-01 20:00:32 +09:00

README.md

mdrs-client-python

The mdrs-client-python is python library and a command-line client for up- and downloading files to and from MDRS based repository.

Installing

pip install -e .

Example Usage

config create

Create remote host configuration

$ mdrs config create neurodata https://neurodata.riken.jp/api

$ mdrs login neurodata:
Username: (enter your login name)
Password: (enter your password)

logout

Logout from remote host

$ mdrs logout neurodata:

whoami

Print current user name

$ mdrs whoami neurodata:

labs

List all laboratories

$ mdrs labs neurodata:

ls

List the folder contents

$ mdrs ls neurodata:/NIU/Repository/
$ mdrs ls -p PW_OPEN_PASSWORD neurodata:/NIU/Repository/PW_Open/

mkdir

Create a new folder

$ mdrs mkdir neurodata:/NIU/Repository/TEST

upload

Upload the file or directory

$ mdrs upload ./sample.dat neurodata:/NIU/Repository/TEST/
$ mdrs upload -r ./dataset neurodata:/NIU/Repository/TEST/

download

Download the file or folder

$ mdrs download neurodata:/NIU/Repository/TEST/sample.dat ./
$ mdrs download -r neurodata:/NIU/Repository/TEST/dataset/ ./
$ mdrs download -p PW_OPEN_PASSWORD neurodata:/NIU/Repository/PW_Open/Readme.dat ./

mv

Move or rename the file or folder

$ mdrs move neurodata:/NIU/Repository/TEST/sample.dat neurodata:/NIU/Repository/TEST2/sample2.dat
$ mdrs move neurodata:/NIU/Repository/TEST/dataset neurodata:/NIU/Repository/TEST2/

rm

Remove the file or folder

$ mdrs rm neurodata:/NIU/Repository/TEST2/sample2.dat
$ mdrs rm -r neurodata:/NIU/Repository/TEST2/dataset

chacl

Change the folder access level

$ mdrs chacl private neurodata:/NIU/Repository/Private
$ mdrs chacl cbs_open -r neurodata:/NIU/Repository/CBS_Open
$ mdrs chacl pw_open -r -p FOLDER_PASSWORD neurodata:/NIU/Repository/PW_Open

metadata

Get a folder metadata

$ mdrs metadata neurodata:/NIU/Repository/TEST/
$ mdrs metadata -p PW_OPEN_PASSWORD neurodata:/NIU/Repository/PW_Open/

file-metadata

Get the file metadata

$ mdrs file-metadata neurodata:/NIU/Repository/TEST/dataset/sample.dat
$ mdrs file-metadata -p PW_OPEN_PASSWORD neurodata:/NIU/Repository/PW_Open/Readme.txt

help

Show the help message and exit

$ mdrs -h