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A command line client for MDRS (Multiomics Data Repository System)
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README.md

mdrs-client-python

The mdrs-client-python is python library and a command-line client for up- and downloading files to and from MDRS based repository.

Installing

poetry install

Example Usage

config create

Create remote host configuration

$ mdrs config create neurodata https://neurodata.riken.jp/api

login

Login to remote host

$ mdrs login neurodata:
Username: (enter your login name)
Password: (enter your password)

logout

Logout from remote host

$ mdrs logout neurodata:

whoami

Print current user name

$ mdrs whoami neurodata:

labs

List all laboratories

$ mdrs labs neurodata:

ls

List the folder contents

$ mdrs ls neurodata:/NIU/Repository/
$ mdrs ls -p PW_OPEN_PASSWORD neurodata:/NIU/Repository/PW_Open/
$ mdrs ls -r neurodata:/NIU/Repository/Dataset1/
$ mdrs ls -J -r neurodata:/NIU/Repository/Dataset1/

mkdir

Create a new folder

$ mdrs mkdir neurodata:/NIU/Repository/TEST

upload

Upload the file or directory

$ mdrs upload ./sample.dat neurodata:/NIU/Repository/TEST/
$ mdrs upload -r ./dataset neurodata:/NIU/Repository/TEST/

download

Download the file or folder

$ mdrs download neurodata:/NIU/Repository/TEST/sample.dat ./
$ mdrs download -r neurodata:/NIU/Repository/TEST/dataset/ ./
$ mdrs download -p PW_OPEN_PASSWORD neurodata:/NIU/Repository/PW_Open/Readme.dat ./

mv

Move or rename the file or folder

$ mdrs mv neurodata:/NIU/Repository/TEST/sample.dat neurodata:/NIU/Repository/TEST2/sample2.dat
$ mdrs mv neurodata:/NIU/Repository/TEST/dataset neurodata:/NIU/Repository/TEST2/

cp

Copy the file and folder

$ mdrs cp neurodata:/NIU/Repository/TEST/sample.dat neurodata:/NIU/Repository/TEST2/sample2.dat
$ mdrs cp -r neurodata:/NIU/Repository/TEST/dataset neurodata:/NIU/Repository/TEST2/

rm

Remove the file or folder

$ mdrs rm neurodata:/NIU/Repository/TEST2/sample2.dat
$ mdrs rm -r neurodata:/NIU/Repository/TEST2/dataset

chacl

Change the folder access level

$ mdrs chacl private neurodata:/NIU/Repository/Private
$ mdrs chacl cbs_open -r neurodata:/NIU/Repository/CBS_Open
$ mdrs chacl pw_open -r -p FOLDER_PASSWORD neurodata:/NIU/Repository/PW_Open

metadata

Get a folder metadata

$ mdrs metadata neurodata:/NIU/Repository/TEST/
$ mdrs metadata -p PW_OPEN_PASSWORD neurodata:/NIU/Repository/PW_Open/

file-metadata

Get the file metadata

$ mdrs file-metadata neurodata:/NIU/Repository/TEST/dataset/sample.dat
$ mdrs file-metadata -p PW_OPEN_PASSWORD neurodata:/NIU/Repository/PW_Open/Readme.txt

help

Show the help message and exit

$ mdrs -h